Hello everybody,
currently I have some trouble with the following kind of error:
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position
155: ordinal not in range(128)
We have encountered it twice now. The first time it was related to a
shared library, which could not be opened
On 06/09/2011 02:47 PM, Arun Selvam wrote:
Hi,
I am new to galaxy, I just downloaded and installed galaxy on my MAC
system. I also download bowtie , and it is working perfectly on the
command line. But am not able to see the bowtie option under mapping
in the galaxy menu.
Are you sure,
I added an example taken from trim.seqs.xml in the Mothur metagenomics
tool_suite to:
https://bitbucket.org/galaxy/galaxy-central/wiki/ToolConfigSyntax
The following will create datasets in the history panel, setting the output data type to
be the same as that of an input dataset named by
On Tue, May 17, 2011 at 2:21 PM, Nate Coraor n...@bx.psu.edu wrote:
Peter Cock wrote:
That sounds really useful - it is something that you plan on adding
to Galaxy officially?
Yes, I'm working on adding a lot of user- and admin- side access to
various numbers about disk usage (used by
Chorny, Ilya wrote:
I am trying to figure out how to pass the current user name to drama.py. I
have had little success so far. None of the environmental variables contain
any current user information. Any thoughts?
Thanks,
Ilya
Hi Ilya,
You can use $__user_email__ in the command
Leandro Hermida wrote:
Hi,
Is it possible to tell Galaxy to use the bare username passed back by
external authentication as the email address without appending any
domain? It seems to complain if it isn't in email address format and
asks you to set up a domain to append in universe.wsgi.
John,
Questions about local installs are best directed to galaxy-dev, so I've moved
the question to this list.
While executing cuffcompare, I encountered this error message:
Error running cuffcompare. [Errno 2] No such file or directory: 'cc_output'
I was practicing RNA-seq analysis
Hi Peter,
On Jun 9, 2011, at 12:02 PM, Peter Cock wrote:
Is there anything documented about the built-in format conversion
within the Galaxy core, rather than tools.
No, not currently - except for a few details in various slide presentations.
Nothing forma though. We're trying to
Hi Nate,
Thank so much for the instructions :) , yes this is what I would want
to do as Galaxy was adding an empty @ after the username. Yep in a
Windows domain environment the bare username (sAMAccountName) is also
an email nickname and works with the Exchange server when you use SMTP
services.
Joe,
Try editing your Sample Form Definition, changing the Field name value from
the default of 1_field_name to be your desired agctac. Then, your csv file
with the line
Sample1,Library1,Lib1Folder1,History,Workflow,agctac
should work.
Greg
On Jun 9, 2011, at 6:03 PM, Joe Cruz wrote:
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