Hi Greg
Thank you very much for you help.
I managed to fix '~/lib/galaxy/tools/__init__.py' manually according
the diff in your changeset, and it is working fine.
Regards, Hans
On 08/16/2011 05:01 PM, Greg Von Kuster wrote:
Hans,
This bug was fixed in the following change set - not
On Wed, Aug 17, 2011 at 1:41 AM, Jeremy Goecks jeremy.goe...@emory.edu wrote:
One idea to address both of these issues is to embed the
original format in the fasta name so that it's clear whether
the coords are BED or GFF (e.g.
hg17_BED_chr1_147962192_147962580).
Or
Luobin Yang wrote:
Hi, Nate,
Yeah, I've already solved the issue, basically used the -e parameter as you
mentioned here. I think the documentation should be corrected.
Thanks, I've fixed the documentation.
Thanks,
Luobin
On Tue, Aug 16, 2011 at 12:53 PM, Nate Coraor n...@bx.psu.edu
David Hoover wrote:
We've run into an error with the SAM to BAM converter.
An error occurred running this job: Samtools Version: 0.1.15 (r949:203)
Error extracting alignments from
(/gs1/users/galaxy/pro/database/files/000/dataset_285.dat), requested number
of bytes is more than a Python
Repost:
Crystal,
If you provide a gene annotation to Cufflinks, the transcripts produced
will match those in the annotation exactly. If you assemble without a
gene annotation, the transcripts produced will match the reference in
some cases, but, in others, will not match the reference due to
