Re: [galaxy-dev] unit tests failures

Hi, Thanks a lot for your answer. I've manually changed lib/galaxy/objectstore/__init__.py while waiting for the fixed to be released. All the unit tests now pass. Anne. On 23 Jan 2012, at 18:51, Nate Coraor wrote: On Jan 23, 2012, at 6:22 AM, Anne Pajon wrote: Hello, I've installed

Re: [galaxy-dev] (no subject)

On 01/24/2012 06:19 AM, Vidya .H.K wrote: Hi, Actually I am not computer expert as well. I have just started to work in this area. so I am not able to figure out how to solve this problem. I request you to elaborate on what you meant in your previous mail. by simulating a complete command

[galaxy-dev] Fwd: Some eggs are out of date...Fetch failed (Mac OS X 10.6) ERRATA CORRIGE

ERRATA CORRIGE: sorry :( $ echo $PATH /System/Library/Frameworks/Python.framework/Versions/2.6/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin Original Message Subject: [galaxy-dev] Some eggs are out of date...Fetch failed (Mac OS X 10.6) Date: Tue, 24

[galaxy-dev] Uploading large file in browser

Hello, I have local instance of galaxy and wanted to modify upload file so that I will be able to upload large files ( 2GB). The reason I am trying to do this in browser is that extra tools for FTP do not really work in my environment because of all the constraints and firewalls. I came up

[galaxy-dev] Error Msg: Cluster could not complete job

Dear Galaxy Support, I'm getting the following error message when trying to process larger Solid files. ERROR MESSAGE: Cluster could not complete job - Compute Quality Statistic-- First got the error message. Ran ok after re-running the job. - Subsequent job of converting qual/csfasta - fastq

Re: [galaxy-dev] software installs: PATH vs env.sh

Thanks for the replies. One extra element I failed to properly describe is that we are running on a cluster with a similar setup to CloudMan. This means we have a galaxyTools/tools directory with folders for each tool, and subfolders for each version with a default symlink to the version currently

Re: [galaxy-dev] installing MACS tool

Hi Dan, Thank you Dan. This was very helpful.I installed MACS version 1.3 and now the tool is working. Hi Vidya, One quick thing to check is that you installed MACS version 1.3 which is supported by the wrapper and not version 1.4 which is not yet supported. Thanks for using Galaxy,

Re: [galaxy-dev] MACS installation

Hi, Thank you very much for your help. I have resolved the problem. I had install MACS version 1.3 instead of MACS version 1.4. Now the tool is working fine. On 01/24/2012 06:19 AM, Vidya .H.K wrote: Hi, Actually I am not computer expert as well. I have just started to work in this area.