It is a region of interest (ROI) toolbox for SPM.
http://marsbar.sourceforge.net/
Is there another toolbox or method that you would suggest I use?
Best,
Mary Kate
On Fri, Feb 13, 2015 at 1:43 PM, Glasser, Matthew glass...@wusm.wustl.edu
wrote:
What is MarsBar? That sounds like a type of
Hi there!
I am trying to extract time series data from regions of interest for HCP
data. I have been advised to use MarsBar in order to do this and was just
wondering if anyone had any input/tips/hints/helpful information about how
to go about doing this? My end goal is to have timecourse data
Hopefully someone out there uses SPM with HCP data and can comment, as most of us use FSL/Connectome Workbench.
Peace,
Matt.
From: Mary Meacham mary.kate.meac...@gmail.com
Date: Friday, February 13, 2015 at 1:45 PM
To: Matt Glasser glass...@wusm.wustl.edu
Cc:
Very likely, but I don’t have a clear sense of what you are wanting to do with the data. Perhaps explaining the analysis you want to perform will lead to an explanation of how to do it with FSL/Connectome Workbench.
Peace,
Matt.
From: Mary Kate Meacham mary.kate.meac...@gmail.com
Date:
Those pieces of information reside in separate files. The mapping of what
area each vertex/voxel belongs to exists in the data of this cifti dlabel
file:
${StudyFolder}/${Subject}/MNINonLinear/fsaverage_LR32k/${Subject}.aparc.a2009s.32k_fs_LR.dlabel.nii
The various fMRI timeseries are in cifti
You can get cifti data into matlab fairly easily (I mention matlab because
you mentioned SPM, which uses matlab), see this FAQ entry:
https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ#HCPUsersFAQ-2.HowdoyougetCIFTIfilesintoMATLAB?
Depending on how your ROIs are specified, you may
Good to hear you have something working.
Peace,
Matt.
From: John Plass johncpl...@gmail.com
Date: Friday, February 13, 2015 at 5:06 PM
To: Matt Glasser glass...@wusm.wustl.edu
Cc: hcp-users@humanconnectome.org hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] Projecting Label into
Hi Matt,
Thanks for your help. Unfortunately, our analysis requires that we use
other software that only accepts volumetric masks. Basically, I'd just like
to mimic as closely as possible what was done in the pre-proccessing
pipeline to create the segmented .nii.gz volumes in each subject's T1w
