Re: [HCP-Users] pipeline structural PostFreesurfer wmparc not found

Tim, Just FYI (may not be the cause of this particular case) for completeness of your documentation, this old ticket is still open (after 6 years) for guest OS in VirtualBox. https://www.virtualbox.org/ticket/10085 Gordon On Jun 29, 2017, at 11:29 AM, Timothy B. Brown

Re: [HCP-Users] How to choose high-pass filter cut-off period for the task data (block design)

We used a sigma of 200s for all tasks. In practice if you clean the data I doubt it matters whether you do anything more than a linear detrend. Peace, Matt. From: > on behalf of David Hofmann

[HCP-Users] 1200 Subjects "Connectome in a Box" now available for order!

News from the Human Connectome Project (HCP) June 29, 2017 We are happy to announce that the HCP data release storefront has reopened, and that the 1200 Subjects Data Release is now available for purchase. This dataset is nearly 87 TB in total, and is being distributed on a set of twelve 8TB

Re: [HCP-Users] pipeline structural PostFreesurfer wmparc not found

Hi, I'm curious to know more about the file systems in use that would cause the symbolic link operation to not be supported. I /think/ you would be getting this "Operation not supported" error if the file system in which your SUBJECTS_DIR exists is a "non-Unix" or "non-Unix-standard" file

Re: [HCP-Users] pipeline structural PostFreesurfer wmparc not found

I see ... I think I m dealing with cifs right now! we will try with a NFS area ... what could work otherwise? Maria Luisa Mandelli, PhD Assistant Professional Researcher University of California, San Francisco 675 Nelson Rising Lane, Suite 190 | San Francisco, CA 94158 Language

Re: [HCP-Users] pipeline structural PostFreesurfer wmparc not found

Symbolic links don't require the folders to be on the same filesystem. The 'operation not supported' error seems unusual for making a symbolic link. Aside from the usual things to check (folder write permissions, whether there is already something there with that name), also know that windows and

Re: [HCP-Users] pipeline structural PostFreesurfer wmparc not found

Hi! I think I found the problem and I saw that someone else had the same issues before when it tries to create the symbolic link it fails. Here ln -s $FREESURFER_HOME/subjects/fsaverage . ln: failed to create symbolic link `./fsaverage': Operation not supported In old post someone suggest to

Re: [HCP-Users] 7T data

Heartfelt thanks Dan! That was just what I needed. I had noted it said "info to follow" in the manual and my google-fu did not turn up this file. Best Nina On Thu, 29 Jun 2017, Lloyd, Dan wrote: > Hi Nina, > I asked a similar question a while back and Kieth Jamison (Keith Jamison >

[HCP-Users] 7T data

Hi there: Could I get information as to what the MOVIE1-4 tasks were? Specifically: 1. Was the same movie watched each time and if so which one? 2. If so, was it the same part of the same movie repeated, or different parts? 3. Was it a different movie and if so which one? 4. Were MOVIE 1-4 scans

Re: [HCP-Users] Behavioral performance data

That sounds right, the TAB.txt files and EV .txt files should contain the info Kristina is looking for. See the 3T Task fMRI scripts and protocol details section on p.45 of http://humanconnectome.org/storage/app/media/documentation/s1200/HCP_S1200_Release_Reference_Manual.pdf for general info

Re: [HCP-Users] Behavioral performance data

I wasn't involved in these specific experiments, but I THINK the info you're looking for is in the TAB files: ${StudyFolder}/${SubjectID}/MNINonLinear/Results/tfMRI_{ TASK}_{RUN}/{TASK}_run*_TAB.txt There's a row for each event (along with rows for other things you'll have to ignore), and

[HCP-Users] How to choose high-pass filter cut-off period for the task data (block design)

Hi all, I was wondering how to choose the high-pass filter cut-off period (in seconds) for the task data when the block onset files are used for the 1st level GLM (with spm12). As far as I understood the period should be around twice the period until a block repeats. Based on the .txt onset

Re: [HCP-Users] Libnetcdf.so.6 error during mris_make_surfaces

Dear Timothy, thanks a lot for your effort and this detailed description!! Best, Lisa On 28 June 2017 at 19:59, Timothy B. Brown wrote: > Hi Lisa, > > Sorry for the delayed response. I've been working on a solution to the > problem you raised. > > As you noted, the

Re: [HCP-Users] Behavioral performance data

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