[HCP-Users] A Question about tfMRI_X_RL_Atlas.dtseries.nii preprocessing steps

2014-05-02 Thread Mahshid Najafi
Dear HCPs, Hi, I want to use the grayordinate timeseries in tfMRI which are preprocessed with level 1, (which includes smoothing and temporal filtering). So, is tfMRI_WM_RL_Atlas.dtseries.nii in SubjectsID/MNINonLinear/Results/tfMRI_WM_RL/ both minimally preprocessed and level 1 preprocessed? If

Re: [HCP-Users] Grayordinate data

2014-04-07 Thread Mahshid Najafi
map, the -overlap-logic option to that command, and the commands -metric-reduce, -metric-math and -metric-label-import may come in handy. Tim On Fri, Apr 4, 2014 at 2:00 PM, Mahshid Najafi mhs...@gmail.com wrote: Thank you for your suggestions, The wb_command -cifti-seprate worked well. I

Re: [HCP-Users] Grayordinate data

2014-04-04 Thread Mahshid Najafi
on which cortex. Now I want to somehow visualize them in workbench. Do you have any suggestion how to convert or use the text file of vertices to a format which can be visualized by workbench? Thanks for your helps, Mahshid On Tue, Mar 25, 2014 at 1:51 PM, Mahshid Najafi mhs...@gmail.com wrote: Hi

[HCP-Users] Grayordinate data

2014-03-25 Thread Mahshid Najafi
Hi, I have some problems in understanding the rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii data. I used wb_command -cifti-convert -to-gifti-ext rfMRI_REST2_RL_Atlas_hp2000_clean.dtseries.nii rest_gifti to convert CIFTI to gifti and used gifti toolbox to load data in the MATLAB. Q1: The size of