Re: [HCP-Users] A question about the HCP pipeline 4.0.0

2019-05-17 Thread Harms, Michael
[HCP-Users] A question about the HCP pipeline 4.0.0 Dear HCP experts, I have a question about the HCP pipeline 4.0.0. When using FreeSurferPipelineBatch.sh, it cannot find recon-all.v6.hires, conf2hires, and longmc. Is there a specific version of FreeSurfer 6.0 for HCP?

[HCP-Users] A question about the HCP pipeline 4.0.0

2019-05-17 Thread Aaron C
Dear HCP experts, I have a question about the HCP pipeline 4.0.0. When using FreeSurferPipelineBatch.sh, it cannot find recon-all.v6.hires, conf2hires, and longmc. Is there a specific version of FreeSurfer 6.0 for HCP? Thank you. ___ HCP-Users

Re: [HCP-Users] A question about the HCP pipeline

2019-04-04 Thread Glasser, Matthew
To: Aaron C mailto:aaroncr...@outlook.com>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] A question about the HCP pipeline No, since the subcortical data needed to be in MNI space, we c

Re: [HCP-Users] A question about the HCP pipeline

2019-04-04 Thread Timothy Coalson
No, since the subcortical data needed to be in MNI space, we chose to use MNI space surfaces for each subject so that we only needed to generate a single motion-corrected volume timeseries. Because the per-subject processing uses the individual surfaces and the same warpfield for surface and