Re: [HCP-Users] PALM Viewing results

2018-03-16 Thread Gilman, Jodi
Thank you Tim. I agree about effect size maps being better, but reviewers always want to know what is significant (they are set in their ways!!) So maybe we can do both; an effect size map and then .95-1 in the corr p map? On Mar 16, 2018, at 4:59 PM, Timothy Coalson

Re: [HCP-Users] PALM Viewing results

2018-03-16 Thread Timothy Coalson
You can do whatever you need to to satisfy your reviewers, of course. Showing both in one panel was the idea behind turning the significant regions into label outlines. Take a look at page 5 here: https://wustl.app.box.com/s/ti46uqqlukqnh4u97aw74r53r7p8xu3c In this case, the very large group

Re: [HCP-Users] PALM Viewing results

2018-03-16 Thread Timothy Coalson
Since the extent that passes significance tests is dependent on number of subjects and other statistical power considerations, we instead recommend viewing the effect size (beta) map. You can overlay outlines of what passed the significance threshold by making that into a label file with

[HCP-Users] PALM Viewing results

2018-03-16 Thread Gilman, Jodi
Hi, In documentation for randomise, when viewing the 1-p results in FSLView the min/max display range should be set to 0.95/1.0 so that values less than 0.95 (equivalent to p>0.05) are not shown. If these are corrected values (i.e. corrp) then the visible areas correspond to the statistically