AM
> To: Philip A Cook <coo...@mail.med.upenn.edu>
> Cc: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: Re: [HCP-Users] dMRI after eddy but before acpc-T1W
>
> Hi Philip,
>
> Thank you for your email. Well I a
"hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: Re: [HCP-Users] dMRI after eddy but before acpc-T1W
>
> Hi Philip,
>
> Thank you for your email. Well I am in trouble, since in the Diffusion folder
> I can only see:
>
> bvals
>
uary 22, 2017 at 6:46 AM
To: Philip A Cook <coo...@mail.med.upenn.edu<mailto:coo...@mail.med.upenn.edu>>
Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>"
<hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>>
Subject: Re: [H
Hi Philip,
Thank you for your email. Well I am in trouble, since in the Diffusion
folder I can only see:
bvals
bvecs
data.nii.gz
grad_dev.nii.gz
nodif_brain_mask.nii.gz
I looked up the reference manuals (eg.: https://www.humanconnect
Hi,
I believe the unwarped eddy output will be under
Diffusion/eddy/eddy_unwarped_images.nii.gz
https://github.com/Washington-University/Pipelines/blob/6e22e45a066df542660ad0cdb2e1cec6a373ecb4/DiffusionPreprocessing/scripts/run_eddy.sh#L523
> On Feb 2, 2017, at 10:08 AM, Szabolcs David
Hi All,
I would like to look at the *eddy *corrected diffusion images+bvecs, but
before the realignment to the T1w. Is it possible somehow?
Or maybe just the trafo file of b0 to T1w registration available somewhere?
Cheers,
Szabolcs
___
HCP-Users
