Re: [HCP-Users] Missing Behavioral Files

Hi Ya'el (and Jo), We've looked more into the issue you raised about 16 subjects with missing TAB.txt files for the WM tasks. It turns out the issue is bigger than that, with ALL the *TAB.txt and *Physio_log.txt files missing in the {Subject_ID}/MNINonLinear/Results directories for ALL the

Re: [HCP-Users] Obtaining the MNI coordinates of cluster peaks in the melodic_IC.dscalar.nii ICA maps

They were run in the CIFTI greyordinates space. As it turns out, ICA results from well aligned data look different from those of poorly aligned data, as one gets many components representing misalignment if the data are not well aligned. Peace, Matt. From: James Morrow

Re: [HCP-Users] Obtaining the MNI coordinates of cluster peaks in the melodic_IC.dscalar.nii ICA maps

On Wed, Aug 2, 2017 at 6:02 PM, James Morrow wrote: > Thanks Tim and Matt for the detailed responses. > > > I agree that mapping to volumes is sub-optimal. Our goal is to identify > coords to be used as targets for brain stimulation with TMS. We need MNI > coords for

Re: [HCP-Users] Obtaining the MNI coordinates of cluster peaks in the melodic_IC.dscalar.nii ICA maps

This is challenging for several reasons: Standard volumetric data don’t have good alignment of cortical areas, and cortical areas are complex patches on a convoluted surface not 3D points, so MNI coordinates are not especially meaningful as a way of determining if results are the same across

Re: [HCP-Users] Problems with the HCP Pipeline

I don’t see the error message there. Peace, Matt. From: Nicolo Biagi > Date: Wednesday, August 2, 2017 at 5:52 AM To: Matt Glasser > Subject: Re: [HCP-Users] Problems with the HCP Pipeline

Re: [HCP-Users] Problem with files for 668361 WM task

Unfortunately we're looking for both the EV files as well as the MNINonLinear volumetric nifty data, so we'll wait for the fix. Thanks. -Mike From: Elam, Jennifer [mailto:e...@wustl.edu] Sent: Tuesday, August 01, 2017 3:48 PM To: Angstadt, Mike ;

[HCP-Users] Obtaining the MNI coordinates of cluster peaks in the melodic_IC.dscalar.nii ICA maps

Hi, We have recently downloaded the HCP900 Parcellation + Timeseries + Netmats (820 Subjects) dataset. We would like to obtain the MNI coordinates of cluster peaks in the melodic_IC.dscalar.nii ICA maps. Is there any way to do this? Is the –cifti-extrema function of wb_command the