[HCP-Users] Perl issues with Freesurfer5.3

2018-11-18 Thread Michael Sughrue
I have been working on running the pipelines on a new computer which runs on ubuntu18 and when running Freesurfer5.3HCP it crashes like described in this post https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2016-May/045407.html which seems to be a known incompatibility with

Re: [HCP-Users] Perl issues with Freesurfer5.3

2018-11-18 Thread Glasser, Matthew
This is still being actively worked on. Unfortunately FS6.0 doesn’t work well for highres T1w and T2w (we will be using FreeSurfer’s own functionalities for this in the future once they are working). Once we have something ready and vetted, we will announce it and make it available to

Re: [HCP-Users] Perl issues with Freesurfer5.3

2018-11-18 Thread Glasser, Matthew
No that would not be a good fix. I would focus on working around the bug in 5.3 (e.g. by updating the MNI tools) or hopefully we will have a FS 6.0+ that works nearly as well as 5.3. Matt. From: Michael Sughrue mailto:sughru...@gmail.com>> Date: Sunday, November 18, 2018 at 6:41 PM To: Matt