Re: [HCP-Users] Questions about the behavioral data

2014-05-01 Thread Jennifer Elam
Hi Ikko, 1. If you downloaded the behavioral data CSV, the Penn Progressive Matrices scores for each subject are listed under the abbreviations PMAT24_A_CR, PMAT24_A_SI, PMAT24_A_RTCR. If you open the file in Excel or another spreadsheet program these should be columns

Re: [HCP-Users] Individual item scores from NEO questionnaire

2014-05-01 Thread Jennifer Elam
Hi Chris, Your request has been added to the queue of items to be added to ConnectomeDB. We will keep you updated on the status of the ticket. Best, Jenn Jennifer Elam, Ph.D. Outreach Coordinator, Human Connectome Project Washington University School of Medicine Department of Anatomy

Re: [HCP-Users] activation region mask

2014-05-01 Thread Luo,Yishan
I am using dsistudio for fiber tracking. It doesn't accept gifti file. I tried -cifti-separte -metric, but it reports: ERROR: getSurfaceMap called for nonexistant structure I used -cifti-label-import to create the dlabel filemy labellist is OTHER 1 255 0 0 100 So for -metric

Re: [HCP-Users] activation region mask

2014-05-01 Thread Timothy Coalson
Structures are not labels, you need to use CORTEX_LEFT and CORTEX_RIGHT with -cifti-separate, that error says the structure you specified isn't a structure contained in the cifti file. However, it outputs gifti files, and if those don't work in your tractography program, you may need to do some

Re: [HCP-Users] activation region mask

2014-05-01 Thread Luo,Yishan
I tried -label option and OTHER as my structure name, it gives me the same error message.I am wondering is there any wrong with my labellist file? because i specify my label to be named OTHER, there is nor CORTEX_LEFT CORTEX_RIGHT in my label file. Lisa Date: Thu, 1 May 2014 22:00:41 -0500

Re: [HCP-Users] activation region mask

2014-05-01 Thread Timothy Coalson
The command is not asking you for a label name, it is asking you which surface you want, and the current options with our data are left cortex and right cortex. You asked it to find the OTHER surface, which doesn't exist (nonexistant structure). Our data has left and right cortex surface data in

Re: [HCP-Users] activation region mask

2014-05-01 Thread Glasser, Matthew
I would recommend FSL’s probtrackx for tractography and you can visualize the results in Connectome Workbench. I’ve never heard of dsistudio, so I don’t know how to help you use it. We don’t provide DSI data, but rather 3-shell HARDI data. Peace, Matt. From: Timothy Coalson