Re: [HCP-Users] Probtrackx connectivity matrices

2014-05-09 Thread Timothy Coalson
I don't think we currently have a command to warp the fiber orientations into a different space. It is possible in theory, and the matrix4 wouldn't need to be regenerated, but the fiber drawing locations won't line up with voxel centers anymore (this is cosmetic more than anything, but it bothers

Re: [HCP-Users] Probtrackx connectivity matrices

2014-05-09 Thread Timothy Coalson
Well, comparison and averaging are not quite the same thing - the idea of averaging matrix4 presents quite a few challenges, and same voxel space is not the messiest - it is more difficult to reconcile anatomy that isn't (and/or can't be) aligned, so the fiber orientations won't match, or places

Re: [HCP-Users] Probtrackx connectivity matrices

2014-05-09 Thread Glasser, Matthew
That makes sense, particularly as one gets closer to the cortex. I do think Oxford has some algorithm that checks the fiber orientations across subjects and swaps their order (to make them maximally matching) for their bedpostx TBSS. TBSS only cares about aligning the cores of tracts that