News from the Human Connectome Project (HCP)
July 31, 2014
NIH Funding Opportunity on Connectomes Related to Human Disease
NIH recently announced a funding opportunity PAR-14-281: Connectomes Related
to Human Disease (U01)
https://grants.nih.gov/grants/guide/pa-files/PAR-14-281.html for
hi,
i'm checking to see if there is a file containing grayordinates x time for
the resting and/or task runs for each participant. i didn't seem to see one
in appendix 3. but there are a lot of files and i may have missed it!
cheers,
satra
___
Yes they are NIFTI-2 and CIFTI-2.
Peace,
Matt.
From: Satrajit Ghosh sa...@mit.edu
Date: Thursday, July 31, 2014 at 3:13 PM
To: Matt Glasser glass...@wusm.wustl.edu
Cc: hcp-users@humanconnectome.org hcp-users@humanconnectome.org
Subject: Re: [HCP-Users] files containing grayordinates x
Dear all,
I used the Freesurfer_to_fs_LR Pipeline to get 164k fs_LR surface, and used
the command 'wb_import' -spec-file to get some file which can be used in
workbench. Now, I want to project the functional MRI to surface. I think I can
use the command 'wb_command
Hi,
I am new to using connectome workbench. I have some Ginger ALE meta-analsis
files that are in .nii format. I was able to open these as volume files and
can see the data overlayed in Volumes. However, I cannot see them in the
Surface view. Do I need to convert the .nii to be able to
The inner and outer surfaces should be the white and pial surfaces to map
all of cortex (of the same vertex count as the midthickness, so not the
native surfaces). I believe we generally also use a volume mask to exclude
things like CSF and noisy voxels, but I'm not sure exactly what it masks
out
It isn't just a format conversion, it is a volume to surface mapping you
need to do. See the -volume-to-surface-mapping command for the ways that
wb_command can do this:
http://www.humanconnectome.org/software/workbench-command.php?function=-volume-to-surface-mapping
Tim
On Thu, Jul 31, 2014
