Re: [HCP-Users] Downloading HCP data to a shared computing cluster

If it is anything more than a small amount of data, you might consider Connectome in a Box. Peace, Matt. From: > on behalf of Xavier Guell Paradis > Date: Friday,

[HCP-Users] Downloading HCP data to a shared computing cluster

Dear HCP experts, I was wondering if it is possible to download HCP data directly to a shared computing cluster (e.g. the openmind.mit.edu cluster). Since data is downloaded via Aspera Connect, there is no link that one can copy and paste to download data directly to the cluster. Thank you very

Re: [HCP-Users] 900 group average: are individual subjects the "S500 Release Subjects" + the "S900 New Subjects"

Hi Xavier, I would use the CSV file that Mike sent. Those were the subjects included in the group average when it was done at the time of the S900 release by Mike and others. I believe the one extra subject with complete rfMRI and tfMRI data was added to the database after the original S900

Re: [HCP-Users] 900 group average: are individual subjects the "S500 Release Subjects" + the "S900 New Subjects"

Thank you! I noticed (and this is also seen in the image Jenn attached) that the total number of subjects with 100% tasks and 100% resting state is 788 (not 787, which is the number of subjects in the S900 group average). Is there a subject that was excluded from the S900 group average for

Re: [HCP-Users] 900 group average: are individual subjects the "S500 Release Subjects" + the "S900 New Subjects"

Mike just answered while I was writing this, but for everyone's benefit who need to do something similar: To get the list of subjects that were included in the S900 group average task analysis, you need to go to the subject dashboard (click on Explore All Family Subjects to get there from the

Re: [HCP-Users] 900 group average: are individual subjects the "S500 Release Subjects" + the "S900 New Subjects"

For the task group average maps in the S900 release, we used 787 subjects that had 100% complete data on their resting data run and ALL tasks. A list of those subjects is attached. -- Michael Harms, Ph.D. --- Conte Center for the

Re: [HCP-Users] How have the genetic data for HCP been collected?

Hi Todd, We processed blood and saliva samples from HCP subjects for GWAS using the Illumina Mega Chip (has 2M multiethnic SNPs), plus three specialized Illumina chips to look for single nucleotide polymorphisms particularly relevant to neuroimaging studies: Psych chip, NeuroX chip, and

[HCP-Users] 900 group average: are individual subjects the "S500 Release Subjects" + the "S900 New Subjects"

Dear HCP experts, In order to get the level2 data from the individual subjects which were included in the 900 subjects group average, should we put together the subjects of the "S500 Release Subjects" with the "S900 New Subjects"? Thank you, Xavier.