Re: [HCP-Users] MEG_anatomy_transform.txt

2017-02-13 Thread K Jeffrey Eriksen
Georgos, Understood about the naming. Next question: I have found the Brainstorm code that reads the transform file: %% = MRI=>MNI TRANSFORMATION = % Convert transformations from "Brainstorm MRI" to "FieldTrip voxel" Tbst2ft = [diag([-1, 1, 1] ./ sMri.Voxsize), [size(sMri.Cube,1); 0;

Re: [HCP-Users] Edit colors of palette in wb view?

2017-02-13 Thread Xavier Guell Paradis
It worked, thank you very much! Xavier. From: hcp-users-boun...@humanconnectome.org [hcp-users-boun...@humanconnectome.org] on behalf of Harwell, John [jharw...@wustl.edu] Sent: Monday, February 13, 2017 3:38 PM To: hcp-users@humanconnectome.org Subject: Re:

Re: [HCP-Users] Edit colors of palette in wb view?

2017-02-13 Thread Harwell, John
Your file appears to be a NIFTI volume file. Use the command “wb_command -volume-label-import”. This command adds labels to the volume file’s header and creates a new NIFTI volume that is viewable in wb_view. On Feb 13, 2017, at 1:43 PM, Xavier Guell Paradis

Re: [HCP-Users] Edit colors of palette in wb view?

2017-02-13 Thread Timothy Coalson
The file extension suggests that it is a volume file, so use -volume-label-import. Tim On Feb 13, 2017 1:44 PM, "Xavier Guell Paradis" wrote: > Dear John, > My file is a cerebellum map: Buckner2011_7Networks_MNI152_ > FreeSurferConformed1mm_LooseMask.nii. This file contains

Re: [HCP-Users] Edit colors of palette in wb view?

2017-02-13 Thread Xavier Guell Paradis
Dear John, My file is a cerebellum map: Buckner2011_7Networks_MNI152_FreeSurferConformed1mm_LooseMask.nii. This file contains integers from 1 to 7 for the cerebellar structures. I have tried -cifti-label-import and -metric-label-import but they do not seem to work. Which wb command would you

[HCP-Users] Edit colors of palette in wb view?

2017-02-13 Thread Harwell, John
Hello, You will need to convert your data to the CIFTI Label File format using “wb_command". A label table contains a group of labels and each label consists of a text name, RGB color components, and an integer value. When the data is displayed, coloring is performed by matching data values

[HCP-Users] Edit colors of palette in wb view?

2017-02-13 Thread Xavier Guell Paradis
Dear HCP experts, Is it possible to edit the colors of the palette in wb view? For example, is it possible to define color A, color B and color C and tell wb view to show values=1 in color A, values=2 in color B, values=3 in color C, etc.? Thank you very much, Xavier.

Re: [HCP-Users] Expected date of 1,200 subjects release?

2017-02-13 Thread Elam, Jennifer
Hi Xavier, The 1200 Subjects Release will include the per subject, across run level 2 results of the HCP task analysis processing pipeline. The level 3 group average results will come later in a S1200 group average release once that analysis is done. Best, Jenn Jennifer Elam, Ph.D.