Re: [HCP-Users] MEG sensor location file

Thanks Georgios, I was hoping to avoid downloading the raw data files and have modified the scripts to read the grad structure from the icaclass outputs. Seems to work well but I will certainly ask if I have an issue. Thanks for the great resource! Cheers, Parnesh On 20 March 2017 at 15:47,

Re: [HCP-Users] MEG sensor location file

The sensor locations originally are in the raw data files of each scan so you can read them from there with ft_read_sens. But they are also in the processed data in the field .grad in the data structure. For the icamne pipeline and other processing pipelines you only need to define the raw

Re: [HCP-Users] reference surface file for probtrackx2

Thank you all for your support. Regards, Govinda > On 19-Mar-2017, at 10:25 PM, Elam, Jennifer wrote: > > Sorry, it's the diffusion preprocessed package you need. > > Jenn > > Jennifer Elam, Ph.D. > Scientific Outreach, Human Connectome Project > Washington University School

Re: [HCP-Users] reference surface file for probtrackx2

Sorry, it's the diffusion preprocessed package you need. Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387

Re: [HCP-Users] reference surface file for probtrackx2

Hi Govinda, Thanks, Matt. That file is in the structural preprocessed package, if you don't already have it for the subject you are working on. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience,

Re: [HCP-Users] reference surface file for probtrackx2

The appropriate image to use is: ${StudyFolder}/${Subject}/T1w/T1w_acpc_dc_restore_1.25.nii.gz. Peace, Matt. On 3/19/17, 10:53 AM, "hcp-users-boun...@humanconnectome.org on behalf of Govinda Surampudi"

[HCP-Users] MEG sensor location file

Hi, I am trying to run the megconnectome pipelines on the preprocessed MEG datasets. The icamne pipeline for example requires the MEG sensor locations (read using ft_read_sens) and I am not sure if this information is meant to be in the raw data, the preprocessed data or somewhere else. Any help