Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

Thanks Tim for clarifications! It was helpful to know that surface registration is by vertices, not by cifti indices. Best, Reza On Tue, Nov 20, 2018 at 11:48 PM Timothy Coalson wrote: > Surface registration (whether left/right or otherwise) is by vertices, not > by cifti indices, and is

Re: [HCP-Users] Installing HPC

Hi Ilaria, Sign up for a ConnectomeDB account here: https://db.humanconnectome.org Follow the instructions on pp. 24-25 of the S1200 Release Reference

[HCP-Users] Installing HPC

To whom it may concern, I have downloaded the software but I cannot download the data for the tutorial.Can you please help me? |   | | | Kind Regards,Eng. Ilaria CINELLI PhD AFAsMA | | | | Postdoctoral Scholar Civil and Environmental EngineeringTufts University Anderson Hall 308F - 200

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

Surface registration (whether left/right or otherwise) is by vertices, not by cifti indices, and is therefore a separate issue from the medial wall masks (I would bet that the actual mismatches between the two medial walls is more than 20 vertices - the Venn diagram of the sets of included

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

Sorry ... I should have said 20 vertices difference. On Tue, Nov 20, 2018 at 3:52 PM Reza Rajimehr wrote: > ... 29716 indices in RH and 29696 indices in LH of cifti file. > > > On Tue, Nov 20, 2018 at 3:43 PM Reza Rajimehr wrote: > >> But there are 10 more vertices in right hemisphere than

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

... 29716 indices in RH and 29696 indices in LH of cifti file. On Tue, Nov 20, 2018 at 3:43 PM Reza Rajimehr wrote: > But there are 10 more vertices in right hemisphere than left hemisphere ... > > > On Tue, Nov 20, 2018 at 2:50 PM Glasser, Matthew > wrote: > >> Left and right are registered.

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

But there are 10 more vertices in right hemisphere than left hemisphere ... On Tue, Nov 20, 2018 at 2:50 PM Glasser, Matthew wrote: > Left and right are registered. > > Matt. > > From: Reza Rajimehr > Date: Tuesday, November 20, 2018 at 2:04 AM > To: Matt Glasser > Cc: Timothy Coalson ,

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

Left and right are registered. Matt. From: Reza Rajimehr mailto:rajim...@gmail.com>> Date: Tuesday, November 20, 2018 at 2:04 AM To: Matt Glasser mailto:glass...@wustl.edu>> Cc: Timothy Coalson mailto:tsc...@mst.edu>>, hcp-users mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users]

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

Medial wall could have been excluded from a connectivity CIFTI file, not in the file itself, but during an operation on the file using an option like -exclude-medial-wall in the command. But I totally understand the rationale for removing it in the first place. On Tue, Nov 20, 2018 at 12:28 AM

Re: [HCP-Users] Number of cortical vertices in cifti and gifti files

Thanks Matt! Yes, having symmetric medial wall and having registered left and right hemispheres would be helpful and important. On Tue, Nov 20, 2018 at 5:54 AM Glasser, Matthew wrote: > We don’t want the non-greymatter medial wall in CIFTI; however, the medial > wall may undergo revision in