Re: [HCP-Users] Topup_AP dimension issue

That looks like you cut off some brain tissue. I'm not really sure what your goal is here, but if you have images with different voxel sizes, what you may actually need to do is to resample an image (flirt, applywarp, or wb_command -volume-*-resample), and not crop it. Tim On Sun, Mar 24, 2019

Re: [HCP-Users] A question about the MSMSulc

Please download the appropriate compiled release: https://github.com/ecr05/MSM_HOCR/releases Matt. From: Shachar Gal mailto:gal.shac...@gmail.com>> Date: Monday, March 25, 2019 at 7:09 AM To: Matt Glasser mailto:glass...@wustl.edu>> Cc:

Re: [HCP-Users] A question about the MSMSulc

hey following this issue, should the $MSMBINDIR point to this whole directory, or only to the src folder inside of it? thanks, Shachar ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] A question about the MSMSulc

but regarding this repository, you mean MSM_HOCR/src/MSM ? because the files there are .cc, which is not what the pipeline codes look for.. On Mon, 25 Mar 2019 at 13:35, Glasser, Matthew wrote: > It should point to where the compiled MSM binary is. > > Matt. > > From: Shachar Gal > Date:

Re: [HCP-Users] A question about the MSMSulc

It should point to where the compiled MSM binary is. Matt. From: Shachar Gal mailto:gal.shac...@gmail.com>> Date: Monday, March 25, 2019 at 3:17 AM To: "hcp-users@humanconnectome.org" mailto:hcp-users@humanconnectome.org>>, Matt Glasser

Re: [HCP-Users] Resting state networks

Right. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Claude Bajada mailto:c.baj...@fz-juelich.de>> Date: Monday, March 25, 2019 at 5:39 AM To: Timothy Coalson mailto:tsc...@mst.edu>> Cc: "hcp-users@humanconnectome.org"

Re: [HCP-Users] Topup_AP dimension issue

If this is in relation to matching it to a gradient echo image, do they now line up? Matt. From: Marta Moreno mailto:mmorenoort...@icloud.com>> Date: Sunday, March 24, 2019 at 10:22 PM To: Matt Glasser mailto:glass...@wustl.edu>> Cc: HCP Users mailto:hcp-users@humanconnectome.org>> Subject:

Re: [HCP-Users] Resting state networks

Thanks for your reply Tim, by "least pairing an LR with an RL" I assume you mean concatenate the time series, correct? Claude On 22/03/2019 19:19, Timothy Coalson wrote: Inline replies. Tim On Fri, Mar 22, 2019 at 10:17 AM Claude Bajada > wrote: Dear