[HCP-Users] BedpostX for 7T Diffusion data

Dear HCP experts, Is bedpostx data available for 7T dMRI scans? Regards, Kamal ___ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Reporting dense analysis results

If you want to make a cluster table, I think percent overlaps with areas is a very reasonable way to do it. I would recommend you follow Tim’s suggestion with vertex areas as well. I would strongly recommend sharing your data as well (if it is CIFTI/GIFTI/NIFTI, the balsa.wustl.edu database

Re: [HCP-Users] Probabilistic tractography for dense connectome

Not as far as I am aware, but Stam might know. Matt. From: mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Aaron C mailto:aaroncr...@outlook.com>> Date: Thursday, April 25, 2019 at 9:15 AM To: "hcp-users@humanconnectome.org"

Re: [HCP-Users] Reporting dense analysis results

For just finding the overlap of some (positive-only) map with the parcels, the script would likely be a lot simpler if you used -cifti-parcellate with the "-method SUM" option (when doing so, I would also recommend using vertex areas, so that the resulting numbers are surface-area integrals rather

[HCP-Users] Probabilistic tractography for dense connectome

Dear HCP experts, I have a question about the probabilistic tractography command used for generating dense connectome (https://wustl.app.box.com/s/wna2cu94pqgt8zskg687mj8zlmfj1pq7). Are there any shared scripts for generating "pial.L.asc", "white.L.asc", "Whole_Brain_Trajectory_ROI_2.nii.gz",

Re: [HCP-Users] Reporting dense analysis results

In a recent paper (Orr et al., bioRxiv ) we made tables of dense activations by overlaying the results on the MMP parcellation and clicking on the clusters to get labels and surface coordinates - see tables 7-10. The tables are awkward looking and

Re: [HCP-Users] "activation" tables for reporting pscalar results

Thanks for all the input on this, its been helpful. -- Joseph M. Orr, Ph.D. Assistant Professor Department of Psychological and Brain Sciences Texas A Institute for Neuroscience Texas A University College Station, TX On Wed, Apr 24, 2019 at 7:34 PM Glasser, Matthew wrote: > I do not report MNI

[HCP-Users] Reporting dense analysis results

Hi folks, Yesterday's question/replies on reporting tables of pscalar results prompted us to ask about a related question - I'm wondering what HCP folks recommend in terms of the format of tabulating/reporting straightforward "activation results" for DENSE data? I couldn't find a prior