Re: [HCP-Users] CIFTI and NIFTI -parcellating rfMRI

2015-11-26 Thread Joelle Zimmermann
>> Conte Center for the Neuroscience of Mental Disorders >> Washington University School of Medicine >> Department of Psychiatry, Box 8134 >> 660 South Euclid Ave. Tel: 314-747-6173 >> St. Louis, MO 63110 Email: mha...@wustl.edu >> >> From:

Re: [HCP-Users] CIFTI and NIFTI -parcellating rfMRI

2015-11-26 Thread Glasser, Matthew
To: Timothy Coalson <tsc...@mst.edu<mailto:tsc...@mst.edu>> Cc: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] CIFTI and NIFTI -parcellating rfM

Re: [HCP-Users] CIFTI and NIFTI -parcellating rfMRI

2015-11-25 Thread Timothy Coalson
ine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: Joelle Zimmermann <joelle.t.zimmerm...@gmail.com> > Date: Wednesday, November 25, 2015 2:40 PM > To: Timothy Coalson <tsc...@

Re: [HCP-Users] CIFTI and NIFTI -parcellating rfMRI

2015-11-25 Thread Joelle Zimmermann
Hi Tim, Thanks for your response. Within the Resting State fMRI 1 preprocessed in the 500 Subjects + MEG2, I see the rfMRI_REST1_LR.nii.gz, which I presume is the Nifti-1 data. And then I see an rfMRI_REST1_LR_Atlas.dtseries.nii - Is that the dtseries.nii Cifti you refer to? Could you explain a

Re: [HCP-Users] CIFTI and NIFTI -parcellating rfMRI

2015-11-24 Thread Timothy Coalson
The .nii.gz files are nifti-1 volumes, while the .dtseries.nii files are Cifti files. If you need spatial information, converting Cifti to nifti-1 is not the way to go about it, instead you could use wb_command -cifti-separate into metric (.func.gii, one per hemisphere) and volume files, or use

[HCP-Users] CIFTI and NIFTI -parcellating rfMRI

2015-11-24 Thread Joelle Zimmermann
Hi all, I'm working with the 500subjects + MEG2 preprocessed Resting State fMRI 1 Preprocessed dataset. Is the data just standard voxel-wise Nifti (it indeed looks like Nifti-1), or is it in a Cifti format that I need to convert to Nifti? My goal is to parcellate this data into ROI's, and I have