Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files

2017-03-28 Thread Glasser, Matthew
gt; Date: Tuesday, March 7, 2017 at 12:40 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files Hi Jenny and others

Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files

2017-03-28 Thread Stephen Smith
p-users-boun...@humanconnectome.org > <mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Kajsa Igelström > <kajsa.igelst...@gmail.com <mailto:kajsa.igelst...@gmail.com>> > Date: Tuesday, March 7, 2017 at 12:40 PM > To: "hcp-users@humanconnectome.org <mailt

Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files

2017-03-28 Thread Jenny Gilbert
gh you will need to select your own ICA > dimensionality). > > Peace, > > Matt. > > From: Jenny Gilbert <jennyrg...@gmail.com> > Date: Tuesday, March 7, 2017 at 2:08 PM > To: Matt Glasser <glass...@wustl.edu> > > Subject: Re: [HCP-Users] ICA failure with volumetric I

Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files

2017-03-07 Thread Glasser, Matthew
-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files Hi Jenny and others! I'm also unable to run these files through Melodic. The most common problem is that it doesn't converge, and under some circumstances it seems l

Re: [HCP-Users] ICA failure with volumetric ICA-FIX denoised files

2017-03-07 Thread Kajsa Igelström
Hi Jenny and others! I'm also unable to run these files through Melodic. The most common problem is that it doesn't converge, and under some circumstances it seems like Melodic just stops in the middle of normalizing individual files, at points that are not logical to me, or reproducible. Best,

[HCP-Users] ICA failure with volumetric ICA-FIX denoised files

2017-03-07 Thread Jenny Gilbert
Hello HCP! I am trying to complete ICA using the volumetric ICA-FIX de noised data (rfMRI_REST1_RL_hp2000_clean.nii.gz files), and melodic keeps failing. It looks like melodic gets hung up on some participants cannot progress while removing the mean image and normalizing by the voxel-wise