Thanks to everybody, you are being very helpful. Much appreciation. _______________ Marta Moreno-Ortega, Ph.D. Postdoctoral Research Fellow Division of Experimental Therapeutics New York State Psychiatric Institute Department of Psychiatry Columbia University College of Physicians and Surgeons
On Feb 3, 2015, at 12:20 PM, "Glasser, Matthew" <glass...@wusm.wustl.edu> wrote: > You also need a T2w scan unless you want to do major hacking on the pipelines. > > Peace, > > Matt. > > From: Jennifer Elam <el...@pcg.wustl.edu> > Date: Tuesday, February 3, 2015 at 11:25 AM > To: "Harms, Michael" <mha...@wustl.edu>, 'Marta Moreno' > <mmorenoort...@icloud.com>, "hcp-users@humanconnectome.org" > <hcp-users@humanconnectome.org> > Subject: Re: [HCP-Users] requirements for HCP pipeline? > > Hi Marta, > As a reminder, there’s also lots of good documentation on the pipelines at > https://github.com/Washington-University/Pipelines/wiki/v3.4.0-Release-Notes,-Installation,-and-Usage. > Might be particularly useful for you methods write up. > > Best, > Jenn > > Jennifer Elam, Ph.D. > Outreach Coordinator, Human Connectome Project > Washington University School of Medicine > Department of Anatomy and Neurobiology, Box 8108 > 660 South Euclid Avenue > St. Louis, MO 63110 > 314-362-9387 > el...@pcg.wustl.edu > www.humanconnectome.org > > From: hcp-users-boun...@humanconnectome.org > [mailto:hcp-users-boun...@humanconnectome.org] On Behalf Of Harms, Michael > Sent: Tuesday, February 03, 2015 8:41 AM > To: Marta Moreno; hcp-users@humanconnectome.org > Subject: Re: [HCP-Users] requirements for HCP pipeline? > > > Hi, > I'm not sure what those numbers for your T1w scan refer to. For fMRI data, > you will need either a traditional gradient echo field map, or a > phase-encoding reversed pair of scans for distortion correction. > > Glasser et al. 2013 is the published reference for the HCP pipelines. > > cheers, > -MH > > -- > Michael Harms, Ph.D. > ----------------------------------------------------------- > Conte Center for the Neuroscience of Mental Disorders > Washington University School of Medicine > Department of Psychiatry, Box 8134 > 660 South Euclid Ave. Tel: 314-747-6173 > St. Louis, MO 63110 Email: mha...@wustl.edu > > From: Marta Moreno <mmorenoort...@icloud.com> > Date: Monday, February 2, 2015 10:45 PM > To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org> > Subject: [HCP-Users] requirements for HCP pipeline? > > Hi users, > > I am going to analyze some data acquired before the HCP pipeline was > established here at PI and I am wondering which would be the minimum > requisites I need. I had collected 2T1w (512, 512, 236), 1T2 and resting > state (3x3x3mm; TR=2). > > Also would need some boiler plate documentation to write the methods from > another data set already analyzed through the HCP pipeline. Any > recommendation, please? > > Thanks, > _______________ > Marta Moreno-Ortega, Ph.D. > Postdoctoral Research Fellow > Division of Experimental Therapeutics > New York State Psychiatric Institute > Department of Psychiatry > Columbia University College of Physicians and Surgeons > > > > > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
