or the Neuroscience of Mental Disorders
> Washington University School of Medicine
> Department of Psychiatry, Box 8134
> 660 South Euclid Ave. Tel: 314-747-6173
> St. Louis, MO 63110 Email: mha...@wustl.edu
>
> From: <hcp-users-boun...@humanconnectome.org> on behalf of A R
Dear HCP users,
How to split/trim a dtseries or ptseries file by number of time points?
Basically an equivalent of fslroi...
Thanks for any info
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HCP-Users@humanconnectome.org
School of Medicine
> Department of Psychiatry, Box 8134
> 660 South Euclid Ave.Tel: 314-747-6173
> St. Louis, MO 63110 Email: mha...@wustl.edu
>
> From: on behalf of Aaron R
>
> Date: Thursday, December 6, 2018 at 10:29 AM
users-boun...@humanconnectome.org> on behalf of Aaron R <
> aaro...@gmail.com>
> Date: Saturday, October 17, 2015 at 4:30 PM
> To: "hcp-users@humanconnectome.org" <hcp-users@humanconnectome.org>
> Subject: [HCP-Users] CIFTIMatlabReaderWriter
>
> Dear
Never mind, I managed to figure it out. The command label-modify-keys
doesn't seem to work however, which makes fixing the key values a bit more
cumbersome.
Cheers,
Aaron
On Sun, May 20, 2018 at 12:21 AM, Aaron R <aaro...@gmail.com> wrote:
> I've attempted to combine cortical and su
ds correctly. Do "wb_command -version"
>> to check. I'll take a look at the -label-modify-keys command, can you be
>> more specific about what it did?
>>
>> Note that Neurodebian has not yet updated workbench, we have a few things
>> to work out with them. Ho
Dear HCP users,
I would like to know which parcels survived thresholding (using wb_command
-cifti-math on ptseries) - just a list of parcel names, e.g. L_p10p_ROI,
L_p47r_ROI, L_TGv_ROI, AMYGDALA_LEFT, etc.
I've converting to ROI, cifti-reduce, cifti-restrict-dense-map, etc. No
luck. Is there
will tell you the parcel names, in the order they
> are in the file, giving you the missing piece.
>
> Tim
>
>
> On Thu, Jun 28, 2018, 8:37 AM Aaron R wrote:
>
>> Hi Matt,
>>
>> Thanks for the reply, but unfortunately wb_command -file-information
>> doe
, Matthew
wrote:
> wb_command -file-information might be able to help with this.
>
> Matt.
>
> From: on behalf of Aaron R <
> aaro...@gmail.com>
> Date: Wednesday, June 27, 2018 at 8:19 AM
> To: "hcp-users@humanconnectome.org"
> Subject: [HCP-Users] lis
Dear HCP users,
I'm getting an error with fix 1.067, the cifti variance normalization field
is not created. The file filtered_func_data_clean_vn.nii.gz is created
however, and everything else is ok. In .fix.log, i see:
The file
'/usr/local/gifti/ciftisavereset.m'
is not in the
Dear HCP Users,
Regarding bias field correction of fMRI data, in Glasser et al.
(Supplementary Methods For
A Multi-modal Parcellation of Human Cerebral Cortex), it states:
"The scaled [bias] field was used as a reference BOLD intensity image when
computing bias free beta effect size maps"
Was
Dear HCP users,
What's the current link for the matlab cifti i/o tools? The link in the
readme here (and everywhere else) is dead:
https://github.com/Washington-University/cifti-matlab
Thanks,
Aaron
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hi HCP,
we are trying to do tractography using FSL and HCP data. i have some questions
-- i suspect they have been answered already, but couldn't find those answers:
1. is there a file containing the grayordinate coordinates in the diffusion
space for a particular subject, both subcortical
Hi matt,
One other thing. I understand that if you take the grayordinate locations of
the vertices and apply the appropriate spatial transform, one gets the vertex
locations in subject space, along with labels, so you have corresponding
cortical points across subjects, with the same vertex
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