Re: [HCP-Users] Topup_AP dimension issue

[Marta Moreno]

Thanks, problem solved!

Leah.

> On Mar 25, 2019, at 2:35 PM, Timothy Coalson  wrote:
> 
> That looks like you cut off some brain tissue.  I'm not really sure what your 
> goal is here, but if you have images with different voxel sizes, what you may 
> actually need to do is to resample an image (flirt, applywarp, or wb_command 
> -volume-*-resample), and not crop it.
> 
> Tim
> 
> 
> On Sun, Mar 24, 2019 at 10:22 PM Marta Moreno  <mailto:mmorenoort...@icloud.com>> wrote:
> Thanks for your response. The image is now cropped, image attached.
> 
> Leah.
> 
> 
> 
> ***
> Leah Moreno, PhD
> Research Scientist
> Division of Experimental Therapeutics
> Department of Psychiatry
> Columbia University Medical Center
> 1051 Riverside Drive, Unit 21
> New York, NY 10032
> phone: (914) 218-7311
> email: mm4...@cumc.columbia.edu <mailto:mm4...@cumc.columbia.edu>
> 
>> On Mar 24, 2019, at 10:58 PM, Glasser, Matthew > <mailto:glass...@wustl.edu>> wrote:
>> 
>> 0 66 to include all slices and probably 0 1 for timepoints tacked onto the 
>> end.
>> 
>> Matt.
>> 
>> From: Marta Moreno > <mailto:mmorenoort...@icloud.com>>
>> Date: Sunday, March 24, 2019 at 9:54 PM
>> To: Matt Glasser mailto:glass...@wustl.edu>>
>> Cc: HCP Users > <mailto:hcp-users@humanconnectome.org>>
>> Subject: Re: [HCP-Users] Topup_AP dimension issue
>> 
>> Thanks for your response. Still seams to be empty. I have attached both 
>> files into this email in case it helps. 
>> 
>> Leah.
>> 
>> 
>> 
>> ***
>> Leah Moreno, PhD
>> Research Scientist
>> Division of Experimental Therapeutics
>> Department of Psychiatry
>> Columbia University Medical Center
>> 1051 Riverside Drive, Unit 21
>> New York, NY 10032
>> phone: (914) 218-7311
>> email: mm4...@cumc.columbia.edu <mailto:mm4...@cumc.columbia.edu>
>> 
>>> On Mar 24, 2019, at 10:47 PM, Glasser, Matthew >> <mailto:glass...@wustl.edu>> wrote:
>>> 
>>> Not negative.
>>> 
>>> Matt.
>>> 
>>> From: Marta Moreno >> <mailto:mmorenoort...@icloud.com>>
>>> Date: Sunday, March 24, 2019 at 9:45 PM
>>> To: Matt Glasser mailto:glass...@wustl.edu>>
>>> Cc: HCP Users >> <mailto:hcp-users@humanconnectome.org>>
>>> Subject: Re: [HCP-Users] Topup_AP dimension issue
>>> 
>>> Thanks for your response. Do you mean running this?: fslroi 
>>> NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96 
>>> 66 66
>>> 
>>> If that is the case the test file seams to be empty.
>>> 
>>> Leah.
>>> 
>>> 
>>> 
>>>> On Mar 24, 2019, at 8:25 PM, Glasser, Matthew >>> <mailto:glass...@wustl.edu>> wrote:
>>>> 
>>>> Subtract 128 from 96 and then take half of that as your start and 96 as 
>>>> your length.
>>>> 
>>>> Matt.
>>>> 
>>>> From: >>> <mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Marta Moreno 
>>>> mailto:mmorenoort...@icloud.com>>
>>>> Date: Sunday, March 24, 2019 at 6:40 PM
>>>> To: HCP Users >>> <mailto:hcp-users@humanconnectome.org>>
>>>> Subject: [HCP-Users] Topup_AP dimension issue
>>>> 
>>>> Dear Experts,
>>>> 
>>>> Maybe a trivial question but how can I change the Topup_AP dimension' size 
>>>> from 128 128 66 to 96 96 66? Using fslroi I am cutting the brain. 
>>>> 
>>>> Thanks,
>>>> 
>>>> Leah.
>>>> 
>>>> ___
>>>> HCP-Users mailing list
>>>> HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org>
>>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
>>>> <http://lists.humanconnectome.org/mailman/listinfo/hcp-users>
>>>> 
>>>>  
>>>> The materials in this message are private and may contain Protected 
>>>> Healthcare Information or other information of a sensitive nature. If you 
>>>> are not the intended recipient, be advised that any unauthorized use, 
>>>> disclosure, copying or the taking of any action in reliance on the 
>>>> contents of this information is strictly prohibited. If you have received

Re: [HCP-Users] Topup_AP dimension issue

[Timothy Coalson]

That looks like you cut off some brain tissue.  I'm not really sure what
your goal is here, but if you have images with different voxel sizes, what
you may actually need to do is to resample an image (flirt, applywarp, or
wb_command -volume-*-resample), and not crop it.

Tim


On Sun, Mar 24, 2019 at 10:22 PM Marta Moreno 
wrote:

> Thanks for your response. The image is now cropped, image attached.
>
> Leah.
>
>
> ***
> Leah Moreno, PhD
> Research Scientist
> Division of Experimental Therapeutics
> Department of Psychiatry
> Columbia University Medical Center
> 1051 Riverside Drive, Unit 21
> New York, NY 10032
> phone: (914) 218-7311
> email: mm4...@cumc.columbia.edu
>
> On Mar 24, 2019, at 10:58 PM, Glasser, Matthew  wrote:
>
> 0 66 to include all slices and probably 0 1 for timepoints tacked onto the
> end.
>
> Matt.
>
> From: Marta Moreno 
> Date: Sunday, March 24, 2019 at 9:54 PM
> To: Matt Glasser 
> Cc: HCP Users 
> Subject: Re: [HCP-Users] Topup_AP dimension issue
>
> Thanks for your response. Still seams to be empty. I have attached both
> files into this email in case it helps.
>
> Leah.
>
>
>
> ***
> Leah Moreno, PhD
> Research Scientist
> Division of Experimental Therapeutics
> Department of Psychiatry
> Columbia University Medical Center
> 1051 Riverside Drive, Unit 21
> New York, NY 10032
> phone: (914) 218-7311
> email: mm4...@cumc.columbia.edu
>
> On Mar 24, 2019, at 10:47 PM, Glasser, Matthew  wrote:
>
> Not negative.
>
> Matt.
>
> From: Marta Moreno 
> Date: Sunday, March 24, 2019 at 9:45 PM
> To: Matt Glasser 
> Cc: HCP Users 
> Subject: Re: [HCP-Users] Topup_AP dimension issue
>
> Thanks for your response. Do you mean running this?: fslroi
> NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96
> 66 66
>
> If that is the case the test file seams to be empty.
>
> Leah.
>
>
>
> On Mar 24, 2019, at 8:25 PM, Glasser, Matthew  wrote:
>
> Subtract 128 from 96 and then take half of that as your start and 96 as
> your length.
>
> Matt.
>
> From:  on behalf of Marta Moreno <
> mmorenoort...@icloud.com>
> Date: Sunday, March 24, 2019 at 6:40 PM
> To: HCP Users 
> Subject: [HCP-Users] Topup_AP dimension issue
>
> Dear Experts,
>
> Maybe a trivial question but how can I change the Topup_AP dimension' size
> from 128 128 66 to 96 96 66? Using fslroi I am cutting the brain.
>
> Thanks,
>
> Leah.
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>
>
> --
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
>
>
>
>
> --
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
>
>
>
>
> --
> The materials in this message are private and may contain Protected
> Healthcare Information or other information of a sensitive nature. If you
> are not the intended recipient, be advised that any unauthorized use,
> disclosure, copying or the taking of any action in reliance on the contents
> of this information is strictly prohibited. If you have received this email
> in error, please immediately notify the sender via telephone or return mail.
>
>
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>

___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Topup_AP dimension issue

[Glasser, Matthew]

If this is in relation to matching it to a gradient echo image, do they now 
line up?

Matt.

From: Marta Moreno mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 10:22 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Topup_AP dimension issue

Thanks for your response. The image is now cropped, image attached.

Leah.

[cid:A5254DC1-6600-41D6-8981-FBA6526606CF@home]

***
Leah Moreno, PhD
Research Scientist
Division of Experimental Therapeutics
Department of Psychiatry
Columbia University Medical Center
1051 Riverside Drive, Unit 21
New York, NY 10032
phone: (914) 218-7311
email: mm4...@cumc.columbia.edu<mailto:mm4...@cumc.columbia.edu>

On Mar 24, 2019, at 10:58 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

0 66 to include all slices and probably 0 1 for timepoints tacked onto the end.

Matt.

From: Marta Moreno mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 9:54 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Topup_AP dimension issue

Thanks for your response. Still seams to be empty. I have attached both files 
into this email in case it helps.

Leah.



***
Leah Moreno, PhD
Research Scientist
Division of Experimental Therapeutics
Department of Psychiatry
Columbia University Medical Center
1051 Riverside Drive, Unit 21
New York, NY 10032
phone: (914) 218-7311
email: mm4...@cumc.columbia.edu<mailto:mm4...@cumc.columbia.edu>

On Mar 24, 2019, at 10:47 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

Not negative.

Matt.

From: Marta Moreno mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 9:45 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Topup_AP dimension issue

Thanks for your response. Do you mean running this?: fslroi 
NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96 66 
66

If that is the case the test file seams to be empty.

Leah.



On Mar 24, 2019, at 8:25 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

Subtract 128 from 96 and then take half of that as your start and 96 as your 
length.

Matt.

From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Marta Moreno 
mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 6:40 PM
To: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Topup_AP dimension issue

Dear Experts,

Maybe a trivial question but how can I change the Topup_AP dimension' size from 
128 128 66 to 96 96 66? Using fslroi I am cutting the brain.

Thanks,

Leah.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.




The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.




The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the send

Re: [HCP-Users] Topup_AP dimension issue

[Marta Moreno]

Thanks for your response. The image is now cropped, image attached.

Leah.



***
Leah Moreno, PhD
Research Scientist
Division of Experimental Therapeutics
Department of Psychiatry
Columbia University Medical Center
1051 Riverside Drive, Unit 21
New York, NY 10032
phone: (914) 218-7311
email: mm4...@cumc.columbia.edu

> On Mar 24, 2019, at 10:58 PM, Glasser, Matthew  wrote:
> 
> 0 66 to include all slices and probably 0 1 for timepoints tacked onto the 
> end.
> 
> Matt.
> 
> From: Marta Moreno  <mailto:mmorenoort...@icloud.com>>
> Date: Sunday, March 24, 2019 at 9:54 PM
> To: Matt Glasser mailto:glass...@wustl.edu>>
> Cc: HCP Users  <mailto:hcp-users@humanconnectome.org>>
> Subject: Re: [HCP-Users] Topup_AP dimension issue
> 
> Thanks for your response. Still seams to be empty. I have attached both files 
> into this email in case it helps. 
> 
> Leah.
> 
> 
> 
> ***
> Leah Moreno, PhD
> Research Scientist
> Division of Experimental Therapeutics
> Department of Psychiatry
> Columbia University Medical Center
> 1051 Riverside Drive, Unit 21
> New York, NY 10032
> phone: (914) 218-7311
> email: mm4...@cumc.columbia.edu <mailto:mm4...@cumc.columbia.edu>
> 
>> On Mar 24, 2019, at 10:47 PM, Glasser, Matthew > <mailto:glass...@wustl.edu>> wrote:
>> 
>> Not negative.
>> 
>> Matt.
>> 
>> From: Marta Moreno > <mailto:mmorenoort...@icloud.com>>
>> Date: Sunday, March 24, 2019 at 9:45 PM
>> To: Matt Glasser mailto:glass...@wustl.edu>>
>> Cc: HCP Users > <mailto:hcp-users@humanconnectome.org>>
>> Subject: Re: [HCP-Users] Topup_AP dimension issue
>> 
>> Thanks for your response. Do you mean running this?: fslroi 
>> NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96 
>> 66 66
>> 
>> If that is the case the test file seams to be empty.
>> 
>> Leah.
>> 
>> 
>> 
>>> On Mar 24, 2019, at 8:25 PM, Glasser, Matthew >> <mailto:glass...@wustl.edu>> wrote:
>>> 
>>> Subtract 128 from 96 and then take half of that as your start and 96 as 
>>> your length.
>>> 
>>> Matt.
>>> 
>>> From: >> <mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Marta Moreno 
>>> mailto:mmorenoort...@icloud.com>>
>>> Date: Sunday, March 24, 2019 at 6:40 PM
>>> To: HCP Users >> <mailto:hcp-users@humanconnectome.org>>
>>> Subject: [HCP-Users] Topup_AP dimension issue
>>> 
>>> Dear Experts,
>>> 
>>> Maybe a trivial question but how can I change the Topup_AP dimension' size 
>>> from 128 128 66 to 96 96 66? Using fslroi I am cutting the brain. 
>>> 
>>> Thanks,
>>> 
>>> Leah.
>>> 
>>> ___
>>> HCP-Users mailing list
>>> HCP-Users@humanconnectome.org <mailto:HCP-Users@humanconnectome.org>
>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
>>> <http://lists.humanconnectome.org/mailman/listinfo/hcp-users>
>>> 
>>>  
>>> The materials in this message are private and may contain Protected 
>>> Healthcare Information or other information of a sensitive nature. If you 
>>> are not the intended recipient, be advised that any unauthorized use, 
>>> disclosure, copying or the taking of any action in reliance on the contents 
>>> of this information is strictly prohibited. If you have received this email 
>>> in error, please immediately notify the sender via telephone or return mail.
>> 
>> 
>>  
>> The materials in this message are private and may contain Protected 
>> Healthcare Information or other information of a sensitive nature. If you 
>> are not the intended recipient, be advised that any unauthorized use, 
>> disclosure, copying or the taking of any action in reliance on the contents 
>> of this information is strictly prohibited. If you have received this email 
>> in error, please immediately notify the sender via telephone or return mail.
> 
> 
>  
> The materials in this message are private and may contain Protected 
> Healthcare Information or other information of a sensitive nature. If you are 
> not the intended recipient, be advised that any unauthorized use, disclosure, 
> copying or the taking of any action in reliance on the contents of this 
> information is strictly prohibited. If you have received this email in error, 
> please immediately notify the sender via telephone or return mail.


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Topup_AP dimension issue

[Glasser, Matthew]

0 66 to include all slices and probably 0 1 for timepoints tacked onto the end.

Matt.

From: Marta Moreno mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 9:54 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Topup_AP dimension issue

Thanks for your response. Still seams to be empty. I have attached both files 
into this email in case it helps.

Leah.



***
Leah Moreno, PhD
Research Scientist
Division of Experimental Therapeutics
Department of Psychiatry
Columbia University Medical Center
1051 Riverside Drive, Unit 21
New York, NY 10032
phone: (914) 218-7311
email: mm4...@cumc.columbia.edu<mailto:mm4...@cumc.columbia.edu>

On Mar 24, 2019, at 10:47 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

Not negative.

Matt.

From: Marta Moreno mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 9:45 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Topup_AP dimension issue

Thanks for your response. Do you mean running this?: fslroi 
NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96 66 
66

If that is the case the test file seams to be empty.

Leah.



On Mar 24, 2019, at 8:25 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

Subtract 128 from 96 and then take half of that as your start and 96 as your 
length.

Matt.

From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Marta Moreno 
mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 6:40 PM
To: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Topup_AP dimension issue

Dear Experts,

Maybe a trivial question but how can I change the Topup_AP dimension' size from 
128 128 66 to 96 96 66? Using fslroi I am cutting the brain.

Thanks,

Leah.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.




The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Topup_AP dimension issue

[Glasser, Matthew]

Not negative.

Matt.

From: Marta Moreno mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 9:45 PM
To: Matt Glasser mailto:glass...@wustl.edu>>
Cc: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: Re: [HCP-Users] Topup_AP dimension issue

Thanks for your response. Do you mean running this?: fslroi 
NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96 66 
66

If that is the case the test file seams to be empty.

Leah.



On Mar 24, 2019, at 8:25 PM, Glasser, Matthew 
mailto:glass...@wustl.edu>> wrote:

Subtract 128 from 96 and then take half of that as your start and 96 as your 
length.

Matt.

From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Marta Moreno 
mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 6:40 PM
To: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Topup_AP dimension issue

Dear Experts,

Maybe a trivial question but how can I change the Topup_AP dimension' size from 
128 128 66 to 96 96 66? Using fslroi I am cutting the brain.

Thanks,

Leah.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>
http://lists.humanconnectome.org/mailman/listinfo/hcp-users



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.



The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Topup_AP dimension issue

[Marta Moreno]

Thanks for your response. Do you mean running this?: fslroi 
NTTMS_s037_181015_3T_SpinEchoFieldMap_AP_1.nii.gz test.nii.gz -16 96 -16 96 66 
66

If that is the case the test file seams to be empty.

Leah.



> On Mar 24, 2019, at 8:25 PM, Glasser, Matthew  wrote:
> 
> Subtract 128 from 96 and then take half of that as your start and 96 as your 
> length.
> 
> Matt.
> 
> From:  > on behalf of Marta Moreno 
> mailto:mmorenoort...@icloud.com>>
> Date: Sunday, March 24, 2019 at 6:40 PM
> To: HCP Users  >
> Subject: [HCP-Users] Topup_AP dimension issue
> 
> Dear Experts,
> 
> Maybe a trivial question but how can I change the Topup_AP dimension' size 
> from 128 128 66 to 96 96 66? Using fslroi I am cutting the brain. 
> 
> Thanks,
> 
> Leah.
> 
> ___
> HCP-Users mailing list
> HCP-Users@humanconnectome.org 
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users 
> 
> 
>  
> The materials in this message are private and may contain Protected 
> Healthcare Information or other information of a sensitive nature. If you are 
> not the intended recipient, be advised that any unauthorized use, disclosure, 
> copying or the taking of any action in reliance on the contents of this 
> information is strictly prohibited. If you have received this email in error, 
> please immediately notify the sender via telephone or return mail.


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users

Re: [HCP-Users] Topup_AP dimension issue

[Glasser, Matthew]

Subtract 128 from 96 and then take half of that as your start and 96 as your 
length.

Matt.

From: 
mailto:hcp-users-boun...@humanconnectome.org>>
 on behalf of Marta Moreno 
mailto:mmorenoort...@icloud.com>>
Date: Sunday, March 24, 2019 at 6:40 PM
To: HCP Users 
mailto:hcp-users@humanconnectome.org>>
Subject: [HCP-Users] Topup_AP dimension issue

Dear Experts,

Maybe a trivial question but how can I change the Topup_AP dimension' size from 
128 128 66 to 96 96 66? Using fslroi I am cutting the brain.

Thanks,

Leah.


___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users


The materials in this message are private and may contain Protected Healthcare 
Information or other information of a sensitive nature. If you are not the 
intended recipient, be advised that any unauthorized use, disclosure, copying 
or the taking of any action in reliance on the contents of this information is 
strictly prohibited. If you have received this email in error, please 
immediately notify the sender via telephone or return mail.

___
HCP-Users mailing list
HCP-Users@humanconnectome.org
http://lists.humanconnectome.org/mailman/listinfo/hcp-users