[Hdf-forum] Test failure of HDF5 1.8.6-pre3 on Solaris x86

2011-02-07 Thread Bernd Rinn
Hi, Just compiled HDF5 1.8.6-pre3 on a Solaris x86 box and got a test failure in testh5mkgrp. The test report says: Verifying h5ls file structure ../testfiles/h5mkgrp_single_latest.h5 *FAILED* Expected result (*.ls) differs from actual result (*.out) ***

Re: [Hdf-forum] How to find path of committed datatype

2011-04-13 Thread Bernd Rinn
Thanks Peter, That does the trick! Bernd On 11-04-13 16:59, Peter Cao wrote: Try the following: 1) Call H5Tcommitted() to check is the dataype is a named datatype 2) Call H5Iget_name() to get a full path to the named dataype. On 4/13/2011 7:40 AM, Bernd Rinn wrote: Hi, Consider I have

[Hdf-forum] ANN: JHDF5 11.09 released

2011-09-06 Thread Bernd Rinn
Announcing JHDF5 11.09: -- Today, we released JHDF5 version 11.09, a high-level library for HDF5 written in Java, which builds on HDF5 1.8.7 and contains some code of HDF-Java 2.7. The most important changes are: * Improvements for working with compound data sets * Add JHI5

Re: [Hdf-forum] HDF5 1.8.8 release candidate is available for testing

2011-10-31 Thread Bernd Rinn
Hi Mike, I'd like to report a regression of 1.8.8-pre1 (compared to 1.8.7) on Linux i386 with GCC 4.6.2. I get the following test failure (excerpt): Testing big big Test Log Testing big file with the

[Hdf-forum] Performance of reading references

2011-11-15 Thread Bernd Rinn
Hi all, I need to read an array of object references. I find the function H5Rget_name() quite slow. A loop like for (i = 0,refPR = refP; i arrayLen; ++i,++refPR) { size = H5Rget_name((hid_t)loc_id, H5R_OBJECT, refPR, rName, rname_buf_size); } /* for (i = 0...) */ takes about

Re: [Hdf-forum] How to load HDF5 files in Java?

2013-01-25 Thread Bernd Rinn
Hi, You may want to have a look at the JHDF5 library (https://wiki-bsse.ethz.ch/x/2QWWAQ). Here is the code which covers your use case in JHDF5: IHDF5SimpleReader reader = HDF5Factory.openForReading(array.h5); double[][] mydata = reader.readDoubleMatrix(mydata); reader.close(); Bernd On

Re: [Hdf-forum] HDF5 1.8.11 release candidate is available for testing

2013-04-15 Thread Bernd Rinn
Hello Albert, The legacy Windows build scripts (subdirectory windows\) seem to be missing in hdf5-1.8.11-pre1.tar.gz. When I copy this directory over from hdf5-1.8.10-patch1.tar.bz2 and compile with VisualStudio 2008 on Windows XP (32bit), then I get the following fatal errors:

Re: [Hdf-forum] HDF5 1.8.11 release candidate is available for testing

2013-04-15 Thread Bernd Rinn
, Apr 15, 2013 at 4:59 PM, Bernd Rinn br...@ethz.ch mailto:br...@ethz.ch wrote: Hello Albert, The legacy Windows build scripts (subdirectory windows\) seem to be missing in hdf5-1.8.11-pre1.tar.gz. When I copy this directory over from hdf5-1.8.10-patch1.tar.bz2 and compile

Re: [Hdf-forum] HDF5 1.8.11 release candidate is available for testing

2013-05-25 Thread Bernd Rinn
, Bernd On 2013-04-16 00:21, Bernd Rinn wrote: Thanks for the info. I'd suggest that you adapt release_docs/INSTALL_Windows.txt accordingly. It still reads: The old solutions and projects found in the windows\ folder will be maintained for legacy users until HDF5 1.10. BTW

Re: [Hdf-forum] HDF5 1.8.11 release candidate is available for testing

2013-05-25 Thread Bernd Rinn
On Sat, May 25, 2013 at 11:06 AM, Bernd Rinn br...@ethz.ch wrote: I just tried to compile HDF5 1.8.11 with Visual Studio 9 using CMake. I need to link the library statically, thus I need to use the flag /MT for the C compiler, however, I can't find a way to do it. I tried this: 1. Create build