Christoph, how do you define current coordinates?
As far as I understand, the (xyz) coordinates of the atoms do not
change when you rotate or translate. So current=original at all
times.
rotateSelected does change the atom positions relative to the rest of
the model, so it does change the xyz
Christoph,
So rotateSelected is what you want. (Also just two words: ROTATE SELECTED.)
As Angel mentions, I don't think you will run into any trouble here unless
you want to apply multiple rotation/translations. In that case, you could
save the rotation/translation as a Jmol variable in the form
Hi Angel,
Christoph, how do you define current coordinates?
I mean the coordinates after performing a rotation / translation in contrast to
the original coordinates
in the protein file.
I always want to start the rotation/ translation from the original PDB
coordinates.
This is probably not
Hi Bob,
save coordinates
restore coordinates
this might be a straight forward method.
I have to test this immediatly and will come back soon!
Thanks!
--
The Next 800 Companies to Lead America's Growth:
Hi Bob
I looked at some examples of the save-command.
It seems that the state of all loaded molecules was saved.
Is it possible to save just the one model under consideration?
If you say that this is potentially memory consuming,
I might rather save the coordinates in a flat float[] array.
save/restore coordinates saves coordinates in an array of point3f -- not
much different from float[], I think.
also, that operates on the currently selected set, so you can just use
select 1.1
save coordinates 1
select 1.1
restore coordinates 1
But since you will probably be looking at
select 1.1
save coordinates 1
Thanks Bob,
superposition works fine now.
Two questions:
1. How to specify pdb insertion codes in selections
2. Can I obtain the JMenuBar?
Three bugs:
1. Why zoom with wheel and not ctrl-wheel? Bug or by intention?
2. Tilde (i.e. $HOME) not working in file paths
On Thu, Nov 4, 2010 at 12:24 PM, Dr. Christoph Gille
christoph.gi...@charite.de wrote:
select 1.1
save coordinates 1
Thanks Bob,
superposition works fine now.
Two questions:
1. How to specify pdb insertion codes in selections
%x
so, for example,
select %A // just the A
