On 11/04/2010 06:52 PM, Robert Hanson wrote:
On Thu, Nov 4, 2010 at 12:24 PM, Dr. Christoph Gille
christoph.gi...@charite.de wrote:
Two questions:
1. How to specify pdb insertion codes in selections
%x
so, for example,
select %A // just the A set
select % or %A //
Insertion codes work well - thanks Rolf,
Here is a problem related to surfaces:
There are two molecules and I want to create a named surface object.
Using the script commands
select 20-22:A and 2.1
isosurface isosurface_pdb1sbt_ent_19_21 solvent on;
This works if and only if there is only the
Hello Christoph
Not sure about the rationale of the error, but t be safe I think you should
create the isosurface
for what you have selected --is that what you want? Then whatever is visible
or not shouldn't
matter, I think
select 20-22:A and 2.1
isosurface isosurface_pdb1sbt_ent_19_21
Hi
When moving a molecule with rotateSelected in Jmol, the surface
objects stay in place and do not move together with the molecule.
That means the molecule and the surface objects dissociate.
I thought about automatically dispose and recompute all surfaces.
But then I dropped this idea because
The idea behind the requirement is that Jmol needs to know which model is to
be considered and so which model to use for the surface calculation. I
suppose as long as only one model is selected, it should not matter. Let me
see if I can relax that restriction.
Can you give me more of a hint as to
2010/11/5 Angel Herráez angel.herr...@uah.es
Hello Christoph
Not sure about the rationale of the error, but t be safe I think you should
create the isosurface
for what you have selected --is that what you want? Then whatever is
visible or not shouldn't
matter, I think
select 20-22:A and
Hi Bob,
The idea behind the requirement is that Jmol needs to know which model is to
be considered and so which model to use for the surface calculation. I
suppose as long as only one model is selected, it should not matter. Let me
see if I can relax that restriction.
I followed Angles
I think I should augment Jmol to allow rotation of surfaces. Perhaps:
rotate SURFACE $id .
As long as we are not animating, that should be possible, I think. Maybe
even if animating
On Fri, Nov 5, 2010 at 3:28 PM, Dr. Christoph Gille
christoph.gi...@charite.de wrote:
Hi
When moving
Hi Bob,
I think I should augment Jmol to allow rotation of surfaces. Perhaps:
rotate SURFACE $id .
And perhaps also consider save and restore since I always start from the
original coordinates.
This would be great! Thanks!
I did not find access to the JPopupMenu.
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