[Jmol-developers] surfaces... volume too?

2011-06-07 Thread Egon Willighagen
Hi Bob, I know you (right?) implemented the marching cubes algorithm to calculate molecular surfaces... does you code also calculate the molecular volume? Egon -- Dr E.L. Willighagen Postdoctoral Researcher Institutet för miljömedicin Karolinska Institutet (http://ki.se/imm) Homepage:

Re: [Jmol-developers] surfaces... volume too?

2011-06-07 Thread Angel Herráez
Hi Egon I searched for volume in the Scripting Doc and this came: isosurface VOLUME Calculates the volume of the current isosurface and stores that value in the isosurfaceVolume variable. The VOLUME parameter may also accompany any other parameters in the construction of an isosurface.

Re: [Jmol-developers] surfaces... volume too?

2011-06-07 Thread Miguel Howard
Actually, I did the original marching cubes implementation. With all the work that Bob did on surfaces he may have ended up redoing it. My recollection is that it did *not* calculate volume. However, it seems to me that it would be straightforward to do. I suspect that any partial boxes could be

Re: [Jmol-developers] surfaces... volume too?

2011-06-07 Thread Egon Willighagen
Hi Miguel! On Tue, Jun 7, 2011 at 6:18 PM, Miguel Howard mig...@jmol.org wrote: Actually, I did the original marching cubes implementation. Oops, sorry! (and cool that you are still listening in!) My recollection is that it did *not* calculate volume. However, it seems to me that it would be

Re: [Jmol-developers] surfaces... volume too?

2011-06-07 Thread Miguel Howard
On Tue, Jun 7, 2011 at 12:52 PM, Egon Willighagen egon.willigha...@gmail.com wrote: Hi Miguel! On Tue, Jun 7, 2011 at 6:18 PM, Miguel Howard mig...@jmol.org wrote: Actually, I did the original marching cubes implementation. Oops, sorry! No problem :) (and cool that you are still listening