On Thu, Jun 30, 2011 at 8:50 AM, Jonathan Gutow <gu...@uwosh.edu> wrote:

>  So I am still at my original question, which is will the boundbox
> coordinates always be parallel to the molecular coordinates?
> >
>

Yes, the bounding box is in molecular coordinates. So except for the
ghosting -- which I actually do think is done best by displaying two
surfaces -- that's no problem with the applet, because you can just deliver
it any way you want to. I suggest doing them in two different frames, but
you wouldn't have to do that.

So the isosurface slab plane.... does precisely what you are looking for.
Both  "slab" and "depth" are possible.
Also, you might want to play around with zshading. That can produce a very
nice effect.



> >
> > By the way, you asked about the possibility of duplicating an isosurface
> so there was a translucent "shadow." Since rendering is a two-pass system, a
> better way
> I like your idea and have sent a comment in a separate message.
>
>
However, the problem then  is that you really don't have full control over
the two colors. Having two surfaces should display just as fast -- actually,
faster, because you don't have to switch colors in between passes. If we did
the ghost thing, we would have to run through all the colixes and reset them
on the fly. Could be done.... but not trivially. Also, this will not
reproduce in PovRAY, I think. (Have to think about that; maybe it will.)

Anyway, sounds great.

Bob



> Jonathan
>
>                         Dr. Jonathan H. Gutow
> Chemistry Department                                gu...@uwosh.edu
> UW-Oshkosh                                          Office: 920-424-1326
> 800 Algoma Boulevard                                FAX:920-424-2042
> Oshkosh, WI 54901
>                http://www.uwosh.edu/facstaff/gutow
>
>
>
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-- 
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St. Olaf Ave.
Northfield, MN 55057
http://www.stolaf.edu/people/hansonr
phone: 507-786-3107


If nature does not answer first what we want,
it is better to take what answer we get.

-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
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