Re: [Jmol-developers] Using Jmol in Jenkins jobs

2014-06-03 Thread Bruno P. Kinoshita
Hello Robert,  What is a Jenkins plug-in?  It is an extension to Jenkins. Jenkins is a build server, used mainly for building software, but that can be used for general automation, systems integration and grid computing (see Apache Mesos). Our goal in BioUno is automate research pipelines

Re: [Jmol-developers] Using Jmol in Jenkins jobs

2014-06-03 Thread Bruno P. Kinoshita
Hello Egon,  So, what kind of protein building are these Jenkins jobs doing? None yet. At the moment the project has one computer vision researcher, one population genetics researcher and two geeks (me included). So we don't really have any researchers using Jenkins for protein building yet.

[Jmol-developers] bug in the script for ligand pockets in PDB

2014-06-03 Thread Angel Herráez
Dear Bob, You're going to love this bug report. It's thrilling! I was today demonstrating the new PDB ligand pocket view that uses the contact command. Guess what... it breaks in Turkish computers, nothing is displayed but the standard protein rendering. I think I have tracked down the issue.

Re: [Jmol-developers] bug in the script for ligand pockets in PDB

2014-06-03 Thread Robert Hanson
Yes, that makes sense. Funny that we just talked about this. string.lowerCase() apparently chokes with Turkish. Go figure. Bob On Tue, Jun 3, 2014 at 2:13 PM, Angel Herráez angel.herr...@uah.es wrote: Dear Bob, You're going to love this bug report. It's thrilling! I was today

Re: [Jmol-developers] bug in the script for ligand pockets in PDB

2014-06-03 Thread Robert Hanson
here it is: http://mattryall.net/blog/2009/02/the-infamous-turkish-locale-bug On Tue, Jun 3, 2014 at 3:21 PM, Robert Hanson hans...@stolaf.edu wrote: Yes, that makes sense. Funny that we just talked about this. string.lowerCase() apparently chokes with Turkish. Go figure. Bob On