[Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread SourceForge.net
Bugs item #2250963, was opened at 2008-11-09 21:25 Message generated for change (Settings changed) made by aherraez You can respond by visiting: https://sourceforge.net/tracker/?func=detailatid=379133aid=2250963group_id=23629 Please note that this message will contain a full copy of the comment

[Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread SourceForge.net
Bugs item #2250963, was opened at 2008-11-09 21:25 Message generated for change (Settings changed) made by aherraez You can respond by visiting: https://sourceforge.net/tracker/?func=detailatid=379133aid=2250963group_id=23629 Please note that this message will contain a full copy of the comment

Re: [Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread Angel Herraez
El 10 Nov 2008 a las 6:24, Robert Hanson escribió: Something you don't like about that? Oh, I rather love it! But don't think it is the most logical place to put it... I though it was overwriting some other entry. Now I checked out older versions and see there was nothing there, before that

Re: [Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread Angel Herraez
The minimize is working again in 11.6.4 - Thanks, Bob! But I see a funny thing which I guess has some relation to this fix: Both app and applet, the topmost entry in the pop-up menu shows the molecule name, but the first submenu entry says Minimize and indeed it runs minimization! Same in

Re: [Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread Robert Hanson
On Mon, Nov 10, 2008 at 6:22 AM, Angel Herraez [EMAIL PROTECTED] wrote: Both app and applet, the topmost entry in the pop-up menu shows the molecule name, but the first submenu entry says Minimize and indeed it runs minimization! Something you don't like about that? Same in 11.7.11

Re: [Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread Robert Hanson
certainly an idea. On Mon, Nov 10, 2008 at 8:57 AM, Angel Herraez [EMAIL PROTECTED] wrote: El 10 Nov 2008 a las 6:24, Robert Hanson escribió: Something you don't like about that? Oh, I rather love it! But don't think it is the most logical place to put it... I though it was overwriting

Re: [Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread Jonathan Gutow
I like Angel's solution. It makes it very clear that the data is being changed. However, the calculate aromatic and calculate Hbonds commands don't change the geometry, so are not quite as dangerous as minimize. I've never looked into the calculate secondary structure command so have no

Re: [Jmol-developers] [ jmol-Bugs-2250963 ] minimize broken in 11.6.3 applet

2008-11-10 Thread Angel Herráez
If we decide to go for that, a restore option would be nice to the user; it would run load * Edit ** Calculate Hbonds ** Calculate secondary structure ** Calculate aromatic ** Minimize ** Restore original structure The other editing tools I thought of are invertSelected,