Re: [Jmol-users] CHIME to JMol data interchange?

2005-11-16 Thread Angel Herraez
Hi, Shravan I am not sure what you mean by generate graphs in Chime. It would help if you provide us a link to what you have now, using Chime. I believe JMol does not posess the capability to generate graphs and is just used to create animated 3-D images for the data present in the PDB

[Jmol-users] zoom in 10.00.43

2005-11-16 Thread John Nixon
Hi, The zoom setting in jmol.jar seems to have changed between 10.00 and 10.00.43 - so my scripts written in 10.00 are wrongly zoomed in 10.00.43. Is there a reason? Thanks John

Re: [Jmol-users] zoom in 10.00.43

2005-11-16 Thread Miguel
Hi, The zoom setting in jmol.jar seems to have changed between 10.00 and 10.00.43 - so my scripts written in 10.00 are wrongly zoomed in 10.00.43. Is there a reason? I believe that the only difference in zoom level occurs when the applet is not square. In 10.00 the applet was scaled so

Re: [Jmol-users] centerAt boundbox coordinates

2005-11-16 Thread Miguel
Is there a way to get Jmol to tell me the current centerAt boundbox coordinates, once I have changed the center by a command such as center 124:a.ca ? Not sure exactly what you are asking with the phrase 'current centerAt boundbox' Here is some stuff in random order that might help: For a

Re: [Jmol-users] centerAt boundbox coordinates

2005-11-16 Thread Bob Hanson
Miguel, have I got this wrong? show center Delivers the coordinates of the center of the model. Units are in Angstroms. Output is in the form center: (centerX, centerY, centerZ) This is static, right? Ooh -- no, it's not. It changes when the molecule is recentered. That's interesting

Re: [Jmol-users] centerAt boundbox coordinates

2005-11-16 Thread Frieda Reichsman
On Nov 16, 2005, at 3:43 PM, Miguel wrote: Is there a way to get Jmol to tell me the current centerAt boundbox coordinates, once I have changed the center by a command such as center 124:a.ca ? Not sure exactly what you are asking with the phrase 'current centerAt boundbox' what I meant

Re: [Jmol-users] centerAt boundbox coordinates

2005-11-16 Thread Miguel
On Nov 16, 2005, at 3:43 PM, Miguel wrote: Is there a way to get Jmol to tell me the current centerAt boundbox coordinates, once I have changed the center by a command such as center 124:a.ca ? Not sure exactly what you are asking with the phrase 'current centerAt boundbox' what I

[Jmol-users] Questions

2005-11-16 Thread Philip Bays
Just a couple of questions about things I have been observing with jmol.1. I have a colleague who uses a HP tablet PC in the classroom --,and everyplace else for that matter.   It is running the tablet version of XP.  However, jmol pages will not run on that machine with the latest incarnation.