Re: [Jmol-users] PDB and JMOL atoms

2006-11-10 Thread Bob Hanson
Makick, If I have this right, you have two disjoint sets -- hydrogen bonds and hyrophobic interactions. You are showing both using hbonds. You have: button1 hydrogen bridges button2 hydrophobic interactions [x] bonds on/off when you click off it's ok, but when you click on both sets of bonds

Re: [Jmol-users] PDB and JMOL atoms

2006-11-10 Thread Bob Hanson
oh, my! Five minutes time and five lines of code, and we have full user-defined flag setting set myflag if myflag;message yes;else;message no;endif # yes set myflag false if myflag;message yes;else;message no;endif # no Thank you, Malick! Bob Heuvel, M.A.D. (Malick) wrote: Dear

Re: [Jmol-users] show state -- Jmol serialization

2006-11-10 Thread Rolf Huehne
Bob Hanson wrote: Something new for Jmol that a number of people have been asking for and I finally figured out how to implement: show state Along with this is a state command on the console and a show state menu item on the pop-up menu. This command delivers a sequence of Jmol script

Re: [Jmol-users] show state -- Jmol serialization

2006-11-10 Thread Bob Hanson
thanks, this is just what I need. Again, this prerelease should be seen as experimental -- there are bound to be problems; I need all the help I can get testing it, like what Rolf did here. Angel, can you check it out with your site? I realize the definitions aren't there, so you would have to

Re: [Jmol-users] show state -- Jmol serialization

2006-11-10 Thread Eric Martz
Dear Bob, I want to encourge your 'show state' initiative. This could be extremely valuable when it is fully implemented. I don't have time to get involved in testing 'show state' now because I have too many other commitments. (What can I say -- even though it is great fun, retirement is a

Re: [Jmol-users] show state -- Jmol serialization

2006-11-10 Thread Bob Hanson
Rolf Huehne wrote: It looks as if inheriting colors is broken. If I provide for example color cartoon none; color atom cyan;, the cartoon keeps its old color. Thanks, this is fixed, and it reminds me of something else new: You can now use jmol and rasmol in any color context -- like group

[Jmol-users] Jmol 10.9.97

2006-11-10 Thread Nicolas Vervelle
Jmol 10.9.97 will be available at http://www.jmol.org/files/ in a few minutes and introduces: --preliminary serialization console; show state (needs testing; look out for other things broken by this) --user-definable flags that can be tested with if;else;endif set myflag true if

Re: [Jmol-users] show state -- Jmol serialization

2006-11-10 Thread Bob Hanson
Eric Martz wrote: 1. One of the most powerful uses of this feature could be an undo capability (see more below). To this end, it would be useful to be able to insert undo-boundary commands in the original script sequence that indicate how far back a single undo request should go. If I