Re: [Jmol-users] Animation: pause/resume, and unwanted frame skipping

2007-06-12 Thread Eric Martz
At 6/10/2007, you wrote: Eric, it is very important to us that you download the latest version (11.1.47, I think) and try it. Please let me know as soon as possible whether animation no longer skips frames for you and otherwise works as expected. I'd like to make sure we have this right before

Re: [Jmol-users] Not all chemicals are molecules

2007-06-12 Thread Alan Hewat
5- Jmol: an open-source Java viewer for three-dimensional atomic and molecular structures 6- Jmol: an open-source Java viewer for three-dimensional chemical, crystallographic, and biomolecular structures. Atomic structure has come to suggest the structure of the atom (cf nuclear structure).

Re: [Jmol-users] Animation: pause/resume, and unwanted frame skipping

2007-06-12 Thread Bob Hanson
Eric Martz wrote: In contrast, anim on restarts from the first frame. and resets the frame range to all models - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express

Re: [Jmol-users] jmol and overlay data

2007-06-12 Thread Raphael A. Bauer
Angel Herraez wrote: Can you think of anything inside jmol that helps me to visualize this abstract superposition mapping? On a first thought, there may be many wasy to indicate that: csame color, lines between matching atoms, etc. The key point is how and where is your assignment

Re: [Jmol-users] Not all chemicals are molecules

2007-06-12 Thread Angel Herraez
Phillip Barak wrote: is their any reason _not_ to specifically that usage specifically, as in: 6- Jmol: an open-source Java viewer for three-dimensional chemical, crystallographic, and biomolecular structures. Well, one reason is to have a simple title. I don't want to disregard any

Re: [Jmol-users] jmol and overlay data

2007-06-12 Thread Angel Herraez
Hi Raphael Tell me what you think of this: http://biomodel.uah.es/angel/RaphaelBauer/mapping.htm - This SF.net email is sponsored by DB2 Express Download DB2 Express C - the FREE version of DB2 express and take control of

[Jmol-users] The future of Java?

2007-06-12 Thread Rzepa, Henry
Steve Jobs at the WWDC: Jobs also confirmed that iPhone won't support Java. [It's] not worth building in, he said. Nobody uses Java anymore. It's this big heavyweight ball and chain. Whilst this might not seem to matter just for the iPhone (although it would have been nice to display Jmol in

Re: [Jmol-users] The future of Java?

2007-06-12 Thread Egon Willighagen
Steve Jobs at the WWDC: Jobs also confirmed that iPhone won't support Java. [It's] not worth building in, he said. Nobody uses Java anymore. It's this big heavyweight ball and chain. Mmmm... interesting thought by Sun. Dump Java into the opensource, continue yourself with your new parallel

Re: [Jmol-users] The future of Java?

2007-06-12 Thread Angel Herraez
Mmmm... So nobody is using Java? Where does he live? And if he doesn't say what's the alternative, is this assertion trustable? I understood that iPhone uses plain MacOSX, so how is Java prevented from working? Do they block installation? What happens with other plugins, like Flash? Can't the

[Jmol-users] problem with spin after loop and quit

2007-06-12 Thread Frieda Reichsman
It seems that after issuing a script with a loop command: move 0 -30 0 0 0 0 0 0 2.0 move 0 30 0 0 0 0 0 0 2.0 loop on I cannot get the structure to spin using quit; spin on until I either - click in the applet, or - issue a moveto command (move command does not work) This is true for Jmol

Re: [Jmol-users] problem with spin after loop and quit

2007-06-12 Thread Bob Hanson
good catch -- simple fix. 11.1.49 Frieda Reichsman wrote: It seems that after issuing a script with a loop command: move 0 -30 0 0 0 0 0 0 2.0 move 0 30 0 0 0 0 0 0 2.0 loop on I cannot get the structure to spin using quit; spin on until I either - click in the applet, or - issue a

[Jmol-users] RotateSelected

2007-06-12 Thread ms
Hello, I tried to use the RotateSelected function, but it doesn't work. In the documentation I found a remark V. 11.2 - new, but the newest stable version to download is 11.0.3, and I cannot believe that the documentation ist earlier online than the program. So my questions : Can I get version

Re: [Jmol-users] The future of Java?

2007-06-12 Thread Egon Willighagen
Steve Jobs at the WWDC: Jobs also confirmed that iPhone won't support Java. [It's] not worth building in, he said. Nobody uses Java anymore. It's this big heavyweight ball and chain. Mmmm... interesting thought by Sun. Dump Java into the opensource, continue yourself with your new

Re: [Jmol-users] The future of Java?

2007-06-12 Thread Rzepa, Henry
Mmmm... So nobody is using Java? Where does he live? And if he doesn't say what's the alternative, is this assertion trustable? I understood that iPhone uses plain MacOSX, so how is Java prevented from working? Do they block installation? What happens with other plugins, like Flash? Can't the

Re: [Jmol-users] The future of Java?

2007-06-12 Thread Egon Willighagen
Some comments on these bits: I have been asked questions such as what is the lifetime of a WEO, and what happens in eg 10 years time when the Java virtual engine is no longer installed/supported on the majority of Web browsers. Jmol is opensource! There is absolutely no reason not to

Re: [Jmol-users] The future of Java?

2007-06-12 Thread Rzepa, Henry
Some comments on these bits: I have been asked questions such as what is the lifetime of a WEO, and what happens in eg 10 years time when the Java virtual engine is no longer installed/supported on the majority of Web browsers. Jmol is opensource! There is absolutely no reason not to