Re: [Jmol-users] unexpected image scaling

2008-08-26 Thread Robert Hanson
I cannot reproduce this problem. Are you sure you have not already defined mybackground PRIOR to the set fontscaling false command? set fontscaling only affects echos created after its invocation. On Mon, Aug 25, 2008 at 5:34 PM, Thomas Stout [EMAIL PROTECTED]wrote: Interesting. I have

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

2008-08-26 Thread Robert Hanson
The properties supported do depend upon the file type. What file type are you working with? Generally you can check this by using getproperty auxiliaryinfo which is a general holder for all sorts of molecular info. Bob On Mon, Aug 25, 2008 at 7:50 AM, Jeff Hansen [EMAIL PROTECTED] wrote:

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

2008-08-26 Thread Jeff Hansen
I'm working with Spartan 04 .smol files. I could use Spartan 06 files if necessary. I'm making progress. I'm able to use jmolGetPropertyAsArray and pull a value out of that. I would like to show the contents of the entire array so I could see what is there and how it is organized, but

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

2008-08-26 Thread Paul Pillot
I use the following dump() script when I want a detailed content of an object/array in javascript : http://binnyva.blogspot.com/2005/10/dump-function-javascript- equivalent-of.html Paul Le 26 août 08 à 20:37, Jeff Hansen a écrit : I'm working with Spartan 04 .smol files. I could use Spartan

Re: [Jmol-users] testing needed

2008-08-26 Thread Eric Martz
At 8/13/08, Bob Hanson wrote: Synchronization --- Eric Martz, I'm hoping you can check out synchronization issues, since you seem to be working on that. The changes I made should not affect synchronization, but they may. Dear Bob, I have done a few tests with 11.5.RC8 and RC9 with

[Jmol-users] changing atom coordinates with {selected}.y

2008-08-26 Thread Angel Herráez
Hello all I had this script for getting a projection of certain (dummy) atoms onto the XZ plane: {selected}.y=0 this works up to 11.5.41 but gives an error in 11.6.RC4 and RC10 Command expected Is this intentional, and how can I achieve the result? Thanks

Re: [Jmol-users] unexpected image scaling

2008-08-26 Thread Thomas Stout
I have a stripped down Jmol implementation that I am using for debugging. It contains nothing but the applet: !DOCTYPE HTML PUBLIC -//W3C//DTD HTML 4.01 Transitional//EN html lang=en head meta http-equiv=Content-Type content=text/html; charset=utf-8 / meta http-equiv=content-language

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

2008-08-26 Thread Jeff Hansen
Thanks Paul. That is very helpful. I was able to use it to display the data in the array in a text area on the web page. Should prove useful for figuring out how to mine the data. *** Jeff Hansen Department of Chemistry and Biochemistry DePauw

Re: [Jmol-users] Jmol-users Digest, getting data from Jmol

2008-08-26 Thread Dean Johnston
If you're using Firefox at all, I've found the Firebug plug-in ( http://getfirebug.com/) to be immensely useful. Whether your debugging Javascript or just want to look at the DOM, it works great for me. Just set a breakpoint right after your jmolGetPropertyAsArray() call and then find your array