Bob-
You're right that that I'm having a lot of fun learning about proteins and
ligands and calculations involving their interactions on my sabbatical. I'm at
the University of Kentucky College of Pharmacy working with Chang-Guo Zhan, a
physical chemist. The group does structure based drug
Robert Hanson wrote:
Final testing appreciated for Jmol 11.6. Anything you can do to try to break
it would be great.
The following commands that used to work at least until 11.5.35 give an
error message in 11.6.RC17:
bound_box = getProperty(boundboxInfo, vector);
vector_x = bound_box.x;
Rolf Huehne wrote:
Robert Hanson wrote:
Hmm. This could be a mix of signed applet versions. Try using
jmolInitialize(.,JmolAppletSigned.jar)
so that it is definitely picking up just the one JAR file.
I'll try
jmolInitialize(.,JmolAppletSigned0.jar)
and see if I forgot to include
I just tried the demo on the jmol.sourceforge.net page, and I get a an error
instead of the demo. The error says: java:security.AccessControlException.
-Jennifer
Jennifer Muzyka
Professor of Chemistry
On sabbatical at University of Kentucky College of Pharmacy
Centre College
Danville, KY
Hi Jennifer
Thanks for reporting this. However, I am seeing no problem.
Please,
1.- Clear your Java cache
(procedure described at
http://wiki.jmol.org:81/index.php/Solving_Java_Problems#Java_cache
2. Clear your browser cache. Quit your browser and reopen it
3. Try the page. If the problem still
Using 11.6.RC17 I get this error:
eval ERROR: el argumento no es válido
line 1 command 64 of file null:
{ selected } . y = 0
The offending script is
select 2.0; spacefill off; wireframe 0.04; color [xFF00FF];
{selected}.y = 0;
It worked in 11.5.41 at least
(I seem to
Angel-
Thanks for the additional information about the protein cavities / isosurfaces.
I tried following your advice about clearing my Java cache in order to get the
Jmol applet on the front page to work, but my browser keeps getting a Page Load
Error for the jmol wiki. I was having the same
Hmm, I don't see that... could be a one-time event?
On Wed, Oct 1, 2008 at 9:56 AM, Jennifer L. Muzyka
[EMAIL PROTECTED] wrote:
I just tried the demo on the jmol.sourceforge.net page, and I get a an
error instead of the demo. The error says:
java:security.AccessControlException.
-Jennifer
I think problems like this have to do with domain issues. We see this
sometimes with different web domain providers, but we haven't seen it at
sourceForge.
On Wed, Oct 1, 2008 at 12:28 PM, Robert Hanson [EMAIL PROTECTED] wrote:
Hmm, I don't see that... could be a one-time event?
On Wed, Oct
One thought about the wiki not loading: I have the same problem for any
link to the wiki that uses the port number.
For example:
http://wiki.jmol.org:81/index.php/Solving_Java_Problems#Java_cache
will never load for me due to the :81 and our local firewall denying
access. If I cut-and-paste the
yeah, I know what that is thanks.
On Wed, Oct 1, 2008 at 8:47 AM, Rolf Huehne [EMAIL PROTECTED] wrote:
Robert Hanson wrote:
Final testing appreciated for Jmol 11.6. Anything you can do to try to
break
it would be great.
The following commands that used to work at least until
same problem
On Wed, Oct 1, 2008 at 8:47 AM, Rolf Huehne [EMAIL PROTECTED] wrote:
Robert Hanson wrote:
Final testing appreciated for Jmol 11.6. Anything you can do to try to
break
it would be great.
The following commands that used to work at least until 11.5.35 give an
error message
Tom-
THANKS for the suggestion about stripping out the port number on the wiki URL.
I did that and the page loaded in a jiffy!
-Jennifer
Message: 5
Date: Wed, 1 Oct 2008 10:58:10 -0700
From: Thomas Stout [EMAIL PROTECTED]
Subject: Re: [Jmol-users] jmol demo on sourceforge
To:
So what's this port 81 thing? leaving that off changes it to the standard
http port 80; I don't know of any system that allows you to use port 81 if
port 80 is the right port.
On Wed, Oct 1, 2008 at 1:17 PM, Jennifer L. Muzyka
[EMAIL PROTECTED] wrote:
Tom-
THANKS for the suggestion about
A few additional bugs were found just today; Nico has released 11.6.RC18 --
those who found these bugs please check that they are fixed there, and we
will give it a few more days and release 11.6 this weekend.
Thanks,
Bob
--
Robert M. Hanson
Professor of Chemistry
St. Olaf College
1520 St.
On Wed, Oct 1, 2008 at 10:08 PM, Robert Hanson [EMAIL PROTECTED] wrote:
So what's this port 81 thing? leaving that off changes it to the standard
http port 80; I don't know of any system that allows you to use port 81 if
port 80 is the right port.
The problem is with the hosting company on
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