[Jmol-users] Multiple viewports in JMol?

2009-02-16 Thread Ashika Umanga Umagiliya
Greetings all, I want to display multiple 5 PDB files in the same JSP.Is there something like multiple viewports in JMol? Thanks in advance, Umanga -- Open Source Business Conference (OSBC), March 24-25, 2009, San

Re: [Jmol-users] Multiple viewports in JMol?

2009-02-16 Thread Angel Herraez
Hello Umanga If you mean seeing the 5 models side by side at the same time, no. You'll need 5 applets. You can load the 5 files into a single applet and show them one by one using the load files or the load append command. Or show them superimposed at the same time, but they will overlap.

Re: [Jmol-users] Chime to Jmol translation

2009-02-16 Thread Angel Herraez
Hello Inbal Time ago, someone wrote a script for doing that (maye in Perl, not sure now) but I'm not sure if it is still available and how trustable it may result, particularly for recent Jmol versions; in any case, I'd rather do it manually. The tasks are: 1. substitute embed tags by

Re: [Jmol-users] Chime to Jmol translation

2009-02-16 Thread Inbal Tuvi-Arad
Hello Angel, Thank you for your help. I will consider seriously your last offer! :) Best wishes, Inbal -Original Message- From: Angel Herraez [mailto:angel.herr...@uah.es] Sent: Monday, February 16, 2009 4:03 PM To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Chime to

Re: [Jmol-users] computing volume and surface area of isosurfaces

2009-02-16 Thread Yi Mao
Thanks everyone for help. I have compared the volume/surface for isosurfaces from Jmol with the literature data, and the agreement is very good! Yi On Fri, Feb 13, 2009 at 7:36 AM, Robert Hanson hans...@stolaf.edu wrote: On Fri, Feb 13, 2009 at 2:42 AM, Christian Baerlocher