After issuing a plot ramachandran command, is there a way to undo it?
I am aware that with forethought, one can
save state ~one
plot rama
restore state ~one
Just wondered if there's something like rama off.
-Eric
Hi again Néstor
Rather different, but may useful for you:
you could use solid translucent sticks for those bonds
It would be something like
select connected(partial);
connect (selected) (selected) single yellow translucent;
Dear Eric,
Not sure where I got that trick, but look at the source of
http://biomodel.uah.es/quimica/get_structures.htm
The model command removes the Ramachandran plot and goes back to
the structure.
The current doc says that ramachandran is an obsolete command
superseeded by plot ramachandran
I think that ramachadran plot is created in another frame. You have to display
back the initial frame using model
paul
- Message d'origine -
De: Angel Herráez angel.herr...@uah.es
Date: Jeudi, Mai 12, 2011 10:59 am
Objet: Re: [Jmol-users] undo ramachandran?
À:
Thanks, Bob.
set rotationRadius is my best choice. I have also applied it now
to other pages that were hardcoded by hand. Great!
For anyone interested, please note that any moveto command contains
rotationRadius as one of the parameters, so it will effectively alter
the initial setting.
Dear jmol,
i need convert .jvxl file to cube file.
This is my goal: for each voxel edge in grid (x,y), i need to get the z
coordinate of the point which intersects the surface.
Are there some scripts or methods to do this?
Thomas Premaor
second try -- this is better. Just
set partialDots TRUE
To see the effect. Depending upon the magnitude of the wireframe setting for
a bond, you will get 2, 4, or 6 dots. Always nice to make a new feature that
actually reduces the code size! See
Can't be done. JVXL is 2D; CUBE files are 3D
On Thu, May 12, 2011 at 5:39 AM, thomas premaor thomas.prem...@gmail.comwrote:
Dear jmol,
i need convert .jvxl file to cube file.
This is my goal: for each voxel edge in grid (x,y), i need to get the z
coordinate of the point which intersects the
Should be able to ZAP that model:
load 1crn.pdb
plot ramachandran
zap 2.1
On Thu, May 12, 2011 at 1:17 AM, Eric Martz ema...@microbio.umass.eduwrote:
After issuing a plot ramachandran command, is there a way to undo it?
I am aware that with forethought, one can
save state ~one
No. But check out write ZIP and write ZIPALL. That's what they are for.
On Wed, May 11, 2011 at 11:17 PM, Eric Martz ema...@microbio.umass.eduwrote:
I see that I can
set imagestate true
write image jpg filename
and the resulting jpg image contains the state script, but it does
not
Thank you very much!!!
I have obtained the effect!
With best wishes!
On Thu, May 12, 2011 at 7:48 AM, Robert Hanson hans...@stolaf.edu wrote:
second try -- this is better. Just
set partialDots TRUE
To see the effect. Depending upon the magnitude of the wireframe setting for
a bond, you
thanks for the reply.
2011/5/12 Robert Hanson hans...@stolaf.edu
Can't be done. JVXL is 2D; CUBE files are 3D
On Thu, May 12, 2011 at 5:39 AM, thomas premaor
thomas.prem...@gmail.comwrote:
Dear jmol,
i need convert .jvxl file to cube file.
This is my goal: for each voxel edge in grid
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