[Jmol-users] bugs in version 13

2013-07-23 Thread Manohar Awasthi
Dear Jmol users, I would like to point out a bug in jmol version 13.0.8 and also the latest version 13.2.0 when used to load a nwchem output file. The following message is copied pasted from the jmol console: #

Re: [Jmol-users] bugs in version 13

2013-07-23 Thread Robert Hanson
Definitely no = after the E on those lines? That would be the problem. I will adapt Jmol to read this NWCHEM version's log file. Could you send me (hans...@stolaf.edu) an example that I can put into our test set, please? On Tue, Jul 23, 2013 at 11:33 AM, Manohar Awasthi manohar.awas...@gmail.com

[Jmol-users] DOCUMENTATION set undo?

2013-07-23 Thread Eric Martz
set undo says is affects the undo/redo buttons on the ... applet console, but I don't see those buttons on either the signed or unsigned applet consoles. (I see them in the application Console.) Should mention of the applet be deleted for set undo? Eric

Re: [Jmol-users] Jmol Problems

2013-07-23 Thread darren.rhodes
Hi Angel Another choice is to use the signed applet. - I've been told by others that I should use the signed applet. You are browsing the page from a web server, aren't you? - No, it's a local drive. I'll try your suggestion and report back here. Thanks for taking the time and trouble to

Re: [Jmol-users] Jmol Problems

2013-07-23 Thread Angel Herráez
You are browsing the page from a web server, aren't you? - No, it's a local drive. Ah, that is the biggest issue. Running Java applets from local disk is getting more and more difficult --even impossible. Either you use signed applet or you install a local webserver and see the pages from

[Jmol-users] JMol cube file support

2013-07-23 Thread Susi Lehtola
Hi, does JMol support cube files containing many orbitals? If it does, how can one pick the right isosurface..? For now I've used the following commands for a cube file only containing a single orbital load orb.cube isosurface pos 0.02 orb.cube color blue isosurface neg -0.02 orb.cube color

Re: [Jmol-users] bugs in version 13

2013-07-23 Thread Robert Hanson
Please do send me a sample file. I have a question about MOs: There are several kinds, ROHF UHF, and DFT. How should we discriminate among these? On Tue, Jul 23, 2013 at 2:17 PM, Robert Hanson hans...@stolaf.edu wrote: Definitely no = after the E on those lines? That would be the problem. I