Re: [Jmol-users] isosurfaceData as JVXL string

2013-12-30 Thread Jaime Prilusky
Thank you. This works perfect. Jaim On Dec 29, 2013, at 9:47 PM, Robert Hanson hans...@stolaf.edumailto:hans...@stolaf.edu wrote: Have a desired isosurface as the current isosurface -- if necessary, use isosurface ID by itself to select. Then issue: show isosurface From JavaScript,

Re: [Jmol-users] Will unsigned applet be blocked soon?

2013-12-30 Thread Rzepa, Henry S
On 29 Dec 2013, at 20:00, Robert Hanson hans...@stolaf.edu wrote: I'm guessing it will be January 14: https://blogs.oracle.com/java-platform-group/entry/new_security_requirements_for_rias http://www.oracle.com/technetwork/topics/security/alerts-086861.html As I understand it, all

Re: [Jmol-users] Will unsigned applet be blocked soon?

2013-12-30 Thread Philip Bays
Henry: I am using the same OS but downloaded last evening’s release of jmol (14.0.3). I test using my sites local network server on an iMac, which should behave like an outside server. My test was to access test2.htm in the jsmol directory. It runs fine with HTML5 and the signed applet. But

Re: [Jmol-users] Will unsigned applet be blocked soon?

2013-12-30 Thread Robert Hanson
The JNLP files are just in the directory with the JAR files. No installation -- just click on one, and the applet should open. On Mon, Dec 30, 2013 at 12:21 AM, Rzepa, Henry S h.rz...@imperial.ac.ukwrote: On 29 Dec 2013, at 20:00, Robert Hanson hans...@stolaf.edu wrote: I'm guessing it

[Jmol-users] Cross Domain Load

2013-12-30 Thread Otis Rothenberger
Bob, I could figure this out by trial and error, but you probably know the answer. Will JSmol load sdf text files cross domain? Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com -- Rapidly

Re: [Jmol-users] Cross Domain Load

2013-12-30 Thread Robert Hanson
as long as the server is allowing full access via its headers. On Mon, Dec 30, 2013 at 11:42 AM, Otis Rothenberger osrot...@chemagic.comwrote: Bob, I could figure this out by trial and error, but you probably know the answer. Will JSmol load sdf text files cross domain? Otis -- Otis

Re: [Jmol-users] Cross Domain Load and Help Request

2013-12-30 Thread Otis Rothenberger
OK, Thanks. Are the following observations correct? Resolver does this. PubChem does this. RCSB does not do this. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 30, 2013, at 12:45 PM, Robert Hanson hans...@stolaf.edu wrote: as long as the server is allowing full

[Jmol-users] another Mac surprise

2013-12-30 Thread Robert Hanson
It appears that Safari has a very strange feature -- at least on my machine, everything works fine using http, but with file://, if I download Jmol, open the zip file, extract the jsmol directory, and start simple2.htm, and immediately clicking on the Signed link to get the signed version, the

Re: [Jmol-users] another Mac surprise

2013-12-30 Thread Greg Edwards
Hi Bob, Wild idea that I haven't really thought through .. rushing beakfast here .. but your mention of different results from opening files in different orders with different apps makes me think of Mac OS X file metadata. Readable and modifiable via xattr. Eg. this is where Mac puts a tag that a

Re: [Jmol-users] another Mac surprise

2013-12-30 Thread Otis Rothenberger
Safari and Firefox sharing the same Java cache??? This doesn't explain the object vs applet thing, however. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 30, 2013, at 4:27 PM, Robert Hanson hans...@stolaf.edu wrote: It appears that Safari has a very strange feature

Re: [Jmol-users] another Mac surprise

2013-12-30 Thread J. Philip Bays
I would think that they both rely on the java console. I wonder what is going on with that? On Mon, Dec 30, 2013 at 4:27 PM, Robert Hanson hans...@stolaf.edu wrote: It appears that Safari has a very strange feature -- at least on my machine, everything works fine using http, but with

Re: [Jmol-users] another Mac surprise

2013-12-30 Thread Otis Rothenberger
Phil, Exactly. That's what I'm thinking. Safari won't cache it, but it will pull it from cache. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Dec 30, 2013, at 7:28 PM, J. Philip Bays pb...@saintmarys.edu wrote: I would think that they both rely on the java console. I

Re: [Jmol-users] another Mac surprise

2013-12-30 Thread Philip Bays
I was having a problem this afternoon with some debugging. I typically disable cache in the developer menu, and use private browsing. nevertheless, I would make a change in my code and the change was not reflected in the browser reload. In fact, I had a line that called on a nonexistent