Thanks, Bob
write COORDS fileName
Writes a file including only the previously selected atoms, modifying the
coordinates to the current view if the file type is one of: CD, JSON,
MOL,
SDF, V2000, or V3000.
OK. No transformed coords in xyz format
2. Reading a PyMOL file
Excellent!
Yes, the documentation was incorrect. Thanks.
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On 03/13/2014 09:26 AM, Angel Herráez wrote:
The caniuse link sounds intriguing --and not explanatory at all ;)
I will have a look.
Behind 'Working Draft' in that page there is actually this link to the
working draft specification:
http://www.w3.org/TR/clipboard-apis/
Regards,
Rolf
--
write t.png
Delivers the image.
On Thu, Mar 13, 2014 at 3:26 AM, Angel Herráez angel.herr...@uah.es wrote:
Thanks, Bob
write COORDS fileName
Writes a file including only the previously selected atoms,
modifying the
coordinates to the current view if the file type is one of:
Also:
var img = new Image();
img.src = data:image/jpg;base64, +
Jmol.getPropertyAsString(jmolApplet0,image);
Now you have a nice antialiased image of the model that you can put
anywhere, for example:
$(body).append(img)
On Thu, Mar 13, 2014 at 7:37 AM, Robert Hanson hans...@stolaf.edu
var img = new Image();
img.src = data:image/jpg;base64, +
Jmol.getPropertyAsString(jmolApplet0,image);
Yes, that's basically what I have. Very fast (when the browser
supports it, luckily now all modern ones do)
write t.png
Delivers the image.
Delivers into a variable for
Hi,
it looks like isosurface coloring in JMol has broken. For instance,
isosurface pos 6.642e-02 orbital.1.cube color chartreuse translucent
results in a plot where the orbital has blue color...
If I change the color manually in the gui from the drop down menu, it
works as it should.
--
Susi,
It's just parameter ordering
1) TRANSLUCENT must come before the color name, not after.
2) the COLOR keyword must come before the file name or be omitted:
isosurface pos 6.642e-02 color translucent chartreuse orbital.1.cube
isosurface pos 6.642e-02 orbital.1.cube translucent chartreuse
On 13 Mar 2014 at 14:51, Robert Hanson wrote:
The user should see a standard browser download notification. no?
Oh yes, for saving the image, right.
I was thinking of our recent discussion on copying to clipboard.
Forget it
One more comment, and I'll stop.
It is true that a Java program can read the clipboard and place contents
into it without any user knowledge. I think it is fortunate that this is
not possible in HTML5. I think what the discussion about an HTML5 clipboard
object is about is providing some sort of
Dear Bob and dear all,
I am trying to set-up a server to help my students to learn organic
chemistry and, due to this, I tried to use a CMS (Joomla, 2.5.17
version, stable, for long term production). The site should be available
in a few days, when IT services of my University (University of
Pierluigi,
Welcome!
That message indicates that your installation is missing critical files.
Perhaps they are on a different server; perhaps they were omitted. If your
script tag, for example, reads:
script src=http://verdi.unito.it/jsmol/JSmol.min.js;/script
then you need to make sure that
FormalCharge seems to be no longer affecting atom radius. With the
previous version a statement as jmolButton(load molecules/nacl333.mol; set
formalCharge (Na) 1; set formalCharge (Cl) -1;spacefill ionic 105%;
background [xEE], NaCl) gave a very reasonable structure with Cl-
larger than Na+.
sure enough. ionic has always been an odd term -- it really means
bonding in Jmol -- and I switched the default name for ionic to be
bondingRadius without realizing that the actual term ionic served
another purpose.
That is fixed. I should have a file for you Friday morning.
Bob
On Thu, Mar
http://chemapps.stolaf.edu/jmol/zip/jmol-14.1.12_2014.03.13.zip
___JmolVersion=14.1.12_2014.03.13
bug fix: spacefill ionic not working
bug fix: set cameraDepth disabled
On Thu, Mar 13, 2014 at 9:52 PM, Robert Hanson hans...@stolaf.edu wrote:
sure enough. ionic has always been an odd term
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