[Jmol-users] JSmol PHP file

2014-07-15 Thread chris.wood
As a follow up to the recent discussion about Firefox 30, and the use of the PHP file, there are a few issues I'd like to get sorted in my head; my current understanding / questions: - If JSmol is being hosted on a remote server (i.e. a website), and the developer has an option to

[Jmol-users] reg: certificate for java applets - for JMol

2014-07-15 Thread Krithika Bhuvaneshwar [kb...@georgetown.edu]
Hello, We use the Jmol Jar files. Ever since Java SE7 was introduced in early 2014 requiring all Java Applets to be signed with a trusted certificate, we have been experiencing issues with the Java Applets. Can you please provide updated jar files with a valid signed certificate for the java

Re: [Jmol-users] reg: certificate for java applets - for JMol

2014-07-15 Thread Rolf Huehne
On 07/15/2014 05:15 PM, Krithika Bhuvaneshwar [kb...@georgetown.edu] wrote: Hello, We use the Jmol Jar files. Ever since Java SE7 was introduced in early 2014 requiring all Java Applets to be signed with a trusted certificate, we have been experiencing issues with the Java Applets. Can you

Re: [Jmol-users] reg: certificate for java applets - for JMol

2014-07-15 Thread Nicolas Vervelle
Hi, Jmol releases available at sourceforge.net should be signed with a proper certificate. https://sourceforge.net/projects/jmol/?source=directory The Jmol website is probably completely outdated, running with an old Jmol version. If someone is willing to update it (Jmol-web project in the

Re: [Jmol-users] reg: certificate for java applets - for JMol

2014-07-15 Thread Krithika Bhuvaneshwar [kb...@georgetown.edu]
Found it - thanks ! -- Ms. Krithika Bhuvaneshwar Bioinformatician/Data Manager Innovation Center for Biomedical Informatics (ICBI) Georgetown University Medical Center, Washington, DC Email: kb...@georgetown.edu ;

[Jmol-users] JSV in web app

2014-07-15 Thread Jennifer L. Muzyka
I am finally getting around to trying to put the JavaScript version of JSpecView into the Spectral Zoo so that I can get away from using Java. I started with the testjsv.htm page, as it seems to be the simplest one in the most recent download. I would like to have a spectrum displayed without

Re: [Jmol-users] JSV in web app

2014-07-15 Thread Angel Herráez
Hi Jennifer I have no experience with JSV, but it may be that the is actually attached to JSmol, not JSV. In the source code of the page I see addSelectionOptions: true, inside the Info variable. Try removing or disabling that one.

[Jmol-users] Java Update 65 Causing Issues?

2014-07-15 Thread David Hibbitts
After updating Java today, I've been unable to run jmol on my webpage: http://atlas.che.virginia.edu/mm/dim.php?user=ddh9rjobid=82043struct=Dimer_Mode.res or any others that i've tried, including: http://jmol.sourceforge.net/demo/atoms/ Java itself, however, seems to work as expected on

Re: [Jmol-users] Java Update 65 Causing Issues?

2014-07-15 Thread Pshemak Maslak
I can confirm that observations. All my (remaining) Jmol (Java) instances show as gray squares. There are no error messages in the Java console (in fact, loading of the page with the app does not trigger opening of the console even if it is set up to open). Other java applets on the same site