Thanks Bob,
We did include Jmol briefly in Scheme 1 and the supporting info. ☺ Actually now
I see a mistake in Scheme 1, it should also have .cif to .wrl with Jmol, not
just .pdb to .wrl.
That work was actually done a year ago (J. Chem. Ed is very slow….) before we
discovered Jmol as a great
Hi Bob,
I should have probably said that this is an EM map, not a crystallography one!
- Is JMol able to set absolute cutoffs (as normally required for EM
maps), rather than using relative sigma values?
- What is the default value of cutoff? The third object does display
On Fri, Sep 5, 2014 at 8:29 AM, Scalfani, Vincent vfscalf...@ua.edu wrote:
P.S. An STL writer in Jmol would be AWESOME!
show me the spec.
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On Fri, Sep 5, 2014 at 8:46 AM, chris.w...@stfc.ac.uk wrote:
Hi Bob,
I should have probably said that this is an EM map, not a crystallography
one!
doesn't matter. It's still messed up. Jmol reads EM maps just fine as far
as I know.
You sure it's OK?
- Is JMol able to set
5 Sep 2014, 9:12, Robert Hanson wrote:
On Fri, Sep 5, 2014 at 8:29 AM, Scalfani, Vincent vfscalf...@ua.edu
wrote:
P.S. An STL writer in Jmol would be AWESOME!
show me the spec.
The info I see for STL in Wikipedia speaks only of triangles. We'd
need cylinders and
It's not a great format, but we do that for other formats as well.
On Fri, Sep 5, 2014 at 9:35 AM, Angel Herráez angel.herr...@uah.es wrote:
5 Sep 2014, 9:12, Robert Hanson wrote:
On Fri, Sep 5, 2014 at 8:29 AM, Scalfani, Vincent vfscalf...@ua.edu
wrote:
P.S. An STL writer in
Yes, I think they are always only triangles?? Though many small triangles can
make a nice sphere…
There are typically some holes in the surface where the bonds meet the atoms,
and we are able to correct this with Netfabb.
From: Robert Hanson [mailto:hans...@stolaf.edu]
Sent: Friday,
It opens fine in Chimera and CCP4MG, but we have just noticed that the data
values in the map range from 0 to 0.48 – is this likely to cause a problem?
Chris
From: Robert Hanson [mailto:hans...@stolaf.edu]
Sent: 05 September 2014 15:49
To: jmol-users@lists.sourceforge.net
Subject: Re:
That's what the header says
MRC header: dmin,dmax,dmean: 0.0,0.4836611,0.037913516
I just opened it in Chimera as well. So Jmol has some sort of bug reading
mrc files.
On Fri, Sep 5, 2014 at 10:18 AM, chris.w...@stfc.ac.uk wrote:
It opens fine in Chimera and CCP4MG, but we have just
Bob, I added the links for the 2 presentations in the Wiki
http://wiki.jmol.org/index.php/Events
Good job!
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Slashdot TV.
Video for Nerds. Stuff that matters.
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You want the other 23? :)
On Fri, Sep 5, 2014 at 10:54 AM, Angel Herráez angel.herr...@uah.es wrote:
Bob, I added the links for the 2 presentations in the Wiki
http://wiki.jmol.org/index.php/Events
Good job!
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