[Jmol-users] autobond and bond tolerance

2008-08-29 Thread Andrew M. Simms
Has something changed recently with defaults related to autobond. Ball and stick structures that were fine in the past seem to end up with nearly every adjacent atom being bonded to each other (i.e. hydrogens bond to their carbon as well as to each other) . Questions: 1. What are the

Re: [Jmol-users] autobond and bond tolerance

2008-08-29 Thread Robert Hanson
1. What are the default values and typical values for: bondTolerance public final static float DEFAULT_BOND_TOLERANCE = 0.45f; minBondDistance //minimum acceptable bonding distance ... from OpenBabel ... mth 2003 05 26 public final static float DEFAULT_MIN_BOND_DISTANCE = 0.4f; All