RE: [Jmol-users] beginning Jmol website

2005-07-08 Thread Robley Light
@lists.sourceforge.net Subject: Re: [Jmol-users] beginning Jmol website I see the file there from my ftp program, so I'm confused. My page is at http://web.centre.edu/muzyka/organic/butane/simple.htm butane.xyz does not exist in the same directory as simple.htm Restated, this file should exist, but does

RE: [Jmol-users] beginning Jmol website

2005-07-08 Thread Miguel
If you have the file somewhere else (say above the Jmol file), can you just use the complete path (i.e. URL) to the file? It is generally best if you use 'relative paths' to reference other files. That way you can restructure your web site more easily. In other words, do not start your

RE: [Jmol-users] beginning Jmol website

2005-07-08 Thread Angel Herraez
Robley and Jennifer, it is not a question of relative or absolute paths, it is that Java will refuse to load files that are above the applet in the folder tree structure, due to security reasons. So, you can have /JmolApplet.jar /molecule.mol or /JmolApplet.jar /models/molecule.mol but not

RE: [Jmol-users] beginning Jmol website

2005-07-08 Thread timothy driscoll
On 2005-07-08 (12:48) Angel Herraez wrote: Robley and Jennifer, it is not a question of relative or absolute paths, it is that Java will refuse to load files that are above the applet in the folder tree structure, due to security reasons. So, you can have /JmolApplet.jar /molecule.mol or

Re: [Jmol-users] beginning Jmol website

2005-07-08 Thread timothy driscoll
On 2005-07-08 (13:27) Egon Willighagen wrote: On Friday 08 July 2005 01:17 pm, timothy driscoll wrote: if you are running from an actual Web server, you can put JmolApplet, Jmol.js, and your pdb files anywhere in relation to each other as long as they are www-readable, and the paths and

Re: [Jmol-users] beginning Jmol website

2005-07-08 Thread timothy driscoll
On 2005-07-08 (13:27) Egon Willighagen wrote: On Friday 08 July 2005 01:17 pm, timothy driscoll wrote: if you are running from an actual Web server, you can put JmolApplet, Jmol.js, and your pdb files anywhere in relation to each other as long as they are www-readable, and the paths and filenames

[Jmol-users] beginning Jmol website

2005-07-07 Thread Jennifer L. Muzyka
I'm finally trying to start converting some of my chime tutorials to jmol, and I'm having a tough time getting a very simple example to work. I basically copied the simple example in the demonstration pages. I've tried several approaches, all of them unsuccessful. I tried running the page

Re: [Jmol-users] beginning Jmol website

2005-07-07 Thread Angel Herraez
Hi Jennifer I have seen this before. Most likely it is due to jmol applet being in a directory **under** that of the model. This is a known problem, though I thought I understood it was so only for local files, no web server files. Anyway, for a start try putting jmolapplet.jar in the same

Re: [Jmol-users] beginning Jmol website

2005-07-07 Thread Miguel
I see the file there from my ftp program, so I'm confused. My page is at http://web.centre.edu/muzyka/organic/butane/simple.htm butane.xyz does not exist in the same directory as simple.htm Restated, this file should exist, but does not: http://web.centre.edu/muzyka/organic/butane/butane.xyz