Thanks, Bob, that's what I needed
It seems that your 2 solutions work the same.
I'm finding out which one is the best solution for me. Of course,
working with RNA is mroe tricky, but that's why I need the algorithm.
so for this context:
Recognized cross-linking includes hydrogen bonding between the purine N1
and pyrimidine N3 in nucleic acids
2011/3/7 Angel Herráez angel.herr...@uah.es
Thanks, Bob, that's what I needed
It seems that your 2 solutions work the same.
I'm finding out which one is the
Hi all
I am tryng to write a script that will detect paired bases (A-U, G-C) in a RNA
molecule.
Before I start trying, any ideas about how to address it would be welcome.
For now, I am thinking of using WITHIN with distance.
(I am assuming that in large pdb files maybe the hbonds detection is
RNA is a bit tricky because the pairing can be rather loose. But here's a
slick way: Use Jmol bioSMILES.
load =1d66
calculate hbonds# necessary for defining the connections
selectionhalos on
select within(group,within(smiles,~d~G(C)))
delay 1
select within(group,within(smiles,~d~A:T))
# ~d~
Oh, also, there is:
select within(basepair,GC)
2011/3/5 Angel Herráez angel.herr...@uah.es
Hi all
I am tryng to write a script that will detect paired bases (A-U, G-C) in a
RNA molecule.
Before I start trying, any ideas about how to address it would be welcome.
For now, I am thinking of
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