[Jmol-users] loading Amber files

I am experimenting with an Amber set of files (topology + coordinates from a molecular dynamics calculation). The files load fine into Jmol (load trajectory) but I cannot get any cartoons or trace renderings. Is this a limitation with the TRAJECTORY option, or a problem with the Amber format?

Re: [Jmol-users] loading Amber files

Possibly related to this: I cannot select atoms based on atom name e.g. select Lys # 88 atoms selected select Lys and *.CA # 0 atoms selected select Lys and alpha # 0 atoms selected Hover displays them correct label %a # works fine

Re: [Jmol-users] loading Amber files

try sending them to me at hans...@stolaf.edu. Might be ok. 2011/2/3 Angel Herráez angel.herr...@uah.es I am experimenting with an Amber set of files (topology + coordinates from a molecular dynamics calculation). The files load fine into Jmol (load trajectory) but I cannot get any cartoons