right, that actually makes sense. In communicating with the applet,
particularly the signed applet, you have to be very careful about threads.
When you use jmolScript() you pass the command to one of two free-running
script processors within Jmol. Commands involving the JavaScript command
must run
Paul, check out this page to see how yours might be different.
http://chemapps.stolaf.edu/jmol/docs/examples-11/simple.htm
It's using the signed applet and working just fine. Maybe has to be newer
than 11.6.RC8, but I don't think so. It should load files from the PDB using
load = and files
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