Tim points out that there are memory bugs (apparently) in the Mac
implementation of Java that prevent this JavaScript method from being
generally useful. That's disappointing but not entirely unexpected. So I
won't claim to have solved this problem. But I have no time to work on
it now. If
Bob,
On 8/6/07, Bob Hanson [EMAIL PROTECTED] wrote:
See http://chemapps.stolaf.edu/jmol/docs/examples-11/compare2.htm
I'm interested if this works on all browsers. I only tested it on a PC
running Windows with Firefox.
It crashes Konqueror/Linux/SMP/x86_64 using Java HotSpot(TM) 64-Bit
Bob Hanson wrote:
Eric Martz wrote:
I surmise that it is still not possible to make the mouse actions
(rotate, zoom at least) in one jmol applet propagate to other
specified jmol applets on the same web page, thereby synchronizing
their mouse-controlled movements. Again, I'd like to
So, Egon. Can you do some investigating and see where exactly it is
crashing?
Bob
Egon Willighagen wrote:
Bob,
On 8/6/07, Bob Hanson [EMAIL PROTECTED] wrote:
See http://chemapps.stolaf.edu/jmol/docs/examples-11/compare2.htm
I'm interested if this works on all browsers. I only tested it
Cool.
This is exactly what I've been doing (work-in-progress)
http://clavius.bc.edu/~pappy/clotelab/localmove/getResults.php?id=739333987http://clavius.bc.edu/%7Epappy/clotelab/localmove/getResults.php?id=739333987
Except, I look for 'newOrientation' and only update on that. Seems to be a
appletDocumentBase= http://jmol.sourceforge.net/demo/dots/
By the way, the show saddles and cavities button should be removed --
that was an early debugging capability that was removed some time ago.
Exception in thread AWT-EventQueue-2 java.lang.NullPointerException
at
Would you like to teach your students the easiest-to-use,
state-of-the-art interactive 3D molecular visualization tools --
tools that they can expect to use for YEARS TO COME?
Would you like to use such tools yourself in your research?
Would you like to eliminate MDL Chime? Would you like
If you are interested in this syncing business, please try
http://chemapps.stolaf.edu/jmol/examples-11/sync.htm
and
http://chemapps.stolaf.edu/jmol/examples-11/sync4.htm
This is a totally different way to sync the applets -- with applets
talking directly to each other (no intermediate
Anybody got a cure for these css blues?
I have a Jmol layout that works solidly with the resizable applet in
Firefox and Safari. However, in Internet Explorer (I know you are all
shocked) the div that contains the applet is flat, and does not load
the applet (no output at all in the Java
Pages not found, from these links.
Frieda
On Aug 6, 2007, at 2:41 PM, Bob Hanson wrote:
If you are interested in this syncing business, please try
http://chemapps.stolaf.edu/jmol/examples-11/sync.htm
and
http://chemapps.stolaf.edu/jmol/examples-11/sync4.htm
This is a totally different
Sorry- wrong URLs in my original post. Correct ones are:
A simplified page that works in IE and not in Safari (that is, it
uses a container div) is here:
http://moleculesinmotion.com/test/containerSimple.htm
The real test pages with all the other content and code are
available too, in
try these:
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
Although they don't appear synchronized at all to me.
On 8/6/07, Frieda Reichsman [EMAIL PROTECTED] wrote:
Pages not found, from these links.
Frieda
On Aug 6,
Thanks Jason, those URLs worked.
On my Mac, OSX 10.4.10, these work GREAT in Safari. I am delighted
that they automatically jump to the synced position when you have
rotated them when NOT synched, and then sync again. But pages are
terrific.
In Firefox, the first page seems fine. On the
Quoting Frieda Reichsman [EMAIL PROTECTED]:
Anybody got a cure for these css blues?
I have a Jmol layout that works solidly with the resizable applet in
Firefox and Safari. However, in Internet Explorer (I know you are all
shocked) the div that contains the applet is flat, and does not load
those links don't work
[EMAIL PROTECTED] wrote:
Quoting Frieda Reichsman [EMAIL PROTECTED]:
Anybody got a cure for these css blues?
I have a Jmol layout that works solidly with the resizable applet in
Firefox and Safari. However, in Internet Explorer (I know you are all
shocked) the
Hi Rolf, thanks for your suggestions. However, the problem is
reproduced in the simple version of the page (first URL below), which
does not have the errors that arise from the more complex versions
that lack some dependent files.
Since the very simple, error-less page reproduces the
try
jmolApplet([100%, 95%]
instead of
jmolApplet(100%, 95%
[EMAIL PROTECTED] wrote:
Quoting Frieda Reichsman [EMAIL PROTECTED]:
Anybody got a cure for these css blues?
I have a Jmol layout that works solidly with the resizable applet in
Firefox and Safari. However, in Internet Explorer
Quoting Frieda Reichsman [EMAIL PROTECTED]:
Hi Rolf, thanks for your suggestions. However, the problem is
reproduced in the simple version of the page (first URL below), which
does not have the errors that arise from the more complex versions
that lack some dependent files.
Since the very
On Aug 6, 2007, at 4:27 PM, [EMAIL PROTECTED] wrote:
I didn't observe any different behaviour of the simple page
http://moleculesinmotion.com/test/containerSimple.htm; in Firefox
1.5.0.12 and IE 7.0.5730.11. The applet loads in both cases and is
resized when the window is resized.
The
On Aug 6, 2007, at 4:27 PM, [EMAIL PROTECTED] wrote:
By the way, 2 of the 3 error messages are still shown in the simple
page.
Wow, my mistake! I apologize... too many different version of the
page have been tried, I guess. Will look into it, thanks.
Hmmm, I find no errors on the page
Wait!! Dice!! Still testing to confirm...
On Aug 6, 2007, at 4:32 PM, Frieda Reichsman wrote:
On Aug 6, 2007, at 4:27 PM, [EMAIL PROTECTED] wrote:
I didn't observe any different behaviour of the simple page
http://moleculesinmotion.com/test/containerSimple.htm; in Firefox
1.5.0.12 and IE
no dice, but thanks - good thought...
On Aug 6, 2007, at 4:18 PM, Bob Hanson wrote:
try
jmolApplet([100%, 95%]
instead of
jmolApplet(100%, 95%
[EMAIL PROTECTED] wrote:
Quoting Frieda Reichsman [EMAIL PROTECTED]:
Anybody got a cure for these css blues?
I have a Jmol layout that
By adding the brackets, the applet now appears in Safari but has a
height and width of about 300 px, no matter what. This is one of the
defaults in Jmol.js for allowedWidth I think, so apparently using the
brackets I got Jmol's attention but the size is still not behaving as
I would like.
Quoting Frieda Reichsman [EMAIL PROTECTED]:
On Aug 6, 2007, at 4:27 PM, [EMAIL PROTECTED] wrote:
By the way, 2 of the 3 error messages are still shown in the simple
page.
Wow, my mistake! I apologize... too many different version of the
page have been tried, I guess. Will look into it,
Quoting Jason Persampieri [EMAIL PROTECTED]:
try these:
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
Although they don't appear synchronized at all to me.
The first one (I didn't try the second one yet) is almost
The real problem appears to be that you are using height=100% for the
applet but are not indicating height=100% in all tables that contain it.
Once that is fixed, the noContainer version should work. Note also
that if you use overflow: auto, I think you have to specify a height.
Otherwise the
Thanks, Rolf, I have removed the reference to std.css which was a
leftover, and corrected the height (missing semi-colon).
I see now the reason I was not seeing these errors has to do with
using a FF extension called Firebug for debugging. Now I know I have
to check the FF built-in error
I'm having a bad-url day! Yes, that's the link...
[EMAIL PROTECTED] wrote:
Quoting Jason Persampieri [EMAIL PROTECTED]:
try these:
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
Although they don't appear synchronized
Jason Persampieri wrote:
try these:
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
http://chemapps.stolaf.edu/jmol/docs/examples-11/sync4.htm
Although they don't appear synchronized at all to me.
Jason, on what
On 8/6/07, Bob Hanson [EMAIL PROTECTED] wrote:
Jason Persampieri wrote:
Although they don't appear synchronized at all to me.
Jason, on what platform? PC or Mac?
Are you seeing the borders go purple? (they should)
Try clicking the []synchronized box a couple of times. Does a border go
On Aug 6, 2007, at 5:54 PM, Bob Hanson wrote:
The real problem appears to be that you are using height=100% for
the
applet but are not indicating height=100% in all tables that
contain it.
Once that is fixed, the noContainer version should work.
Unfortunately, no. I still get an
[100%, 95%]
not
[100%, 95%]
Frieda Reichsman wrote:
On Aug 6, 2007, at 5:54 PM, Bob Hanson wrote:
The real problem appears to be that you are using height=100% for
the
applet but are not indicating height=100% in all tables that
contain it.
Once that is fixed, the noContainer
On Aug 6, 2007, at 6:19 PM, Bob Hanson wrote:
[100%, 95%]
not
[100%, 95%]
jmolApplet(['100%', '95%'], script 3d/loading.spt; script 3d/
01_begin.spt);
Does not change the result.
Frieda-
This SF.net email is
On Aug 6, 2007, at 5:58 PM, Frieda Reichsman wrote:
What I have discovered is that a height and width error are picked up
by FF when I use the improper Jmol.js syntax for height and width of
the applet, leaving out the brackets,that is, using (100%, 95%)
instead of ([100%, 95%])
But, with
The code should read:
jmolApplet(['100%', '95%'], script 3d/loading.spt; script
3d/01_begin.spt);
or
jmolApplet([100%, 95%], script 3d/loading.spt; script
3d/01_begin.spt);
the first parameter is an array -- [a,b] -- where a = 100% and b = 95%
Frieda Reichsman wrote:
On Aug 6, 2007, at
Thank you, thank you, thank you.
I did not understand the syntax for an array.
In conjunction with removing the table altogether, the
containerSimple layout now works in all three browsers I am testing.
I assume I'll be able to extrapolate to the more complex page.
Thank you Bob and Rolf
Frieda Reichsman wrote:
On Aug 6, 2007, at 5:58 PM, Frieda Reichsman wrote:
What I have discovered is that a height and width error are picked up
by FF when I use the improper Jmol.js syntax for height and width of
the applet, leaving out the brackets,that is, using (100%, 95%)
instead of
Hi, this is not really a Jmol question, but it is part of a Jmol
based app and the Jaavscript guru's are here! So, I have a web page
within which is an image map.
When I click on an area of the image map I would like to popup a
window and fill it with some contents. I have so far got
Rajarshi,
see http://chemapps.stolaf.edu/jmol/docs/examples-11/new.htm and
http://chemapps.stolaf.edu/jmol/docs/examples-11/new.js
Look for the word popup
In particular, these pop up the document
http://chemapps.stolaf.edu/jmol/docs/examples-11/JmolPopup.htm, which
goes back to the page that
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